View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_206 (Length: 260)
Name: NF10104A_low_206
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_206 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 4082902 - 4083159
Alignment:
| Q |
1 |
gaaatctcttacatagataatatcttttgtcatgggaagaagagtgccctatgacaatgccaataattcattgataggtccatttctatatttttcattc |
100 |
Q |
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| T |
4082902 |
gaaatcacttacatcgataatatcttttgtcatgggaagaagattgccctatgacaatgccaacaatttattaataggtccatttctaaatttttcattc |
4083001 |
T |
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| Q |
101 |
tccctaataggattagcaacaagcattgccataatcacaactctatgtagtgttcgatttcgaagaagaaaattgacgccgccccctacaacaccgatat |
200 |
Q |
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| T |
4083002 |
tccctaataggattagcaacaagcattgccataatcacaactctatgtagtgttcgatttcgaagaagaaaattgacgccgccccctacaacaccgatat |
4083101 |
T |
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| Q |
201 |
caaacaccaaagaagccacaaccccggacaaaaacccaacaatcgctacaatattcat |
258 |
Q |
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| T |
4083102 |
caaacaccaaagaagccacaaccacggacaaaaacacaacaaacgctacaatattcat |
4083159 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 167
Target Start/End: Complemental strand, 48203072 - 48203029
Alignment:
| Q |
124 |
cattgccataatcacaactctatgtagtgttcgatttcgaagaa |
167 |
Q |
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| T |
48203072 |
cattgccataatcacaactatatgtagttttcgattccgaagaa |
48203029 |
T |
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