View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_208 (Length: 260)

Name: NF10104A_low_208
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_208
NF10104A_low_208
[»] chr8 (3 HSPs)
chr8 (150-253)||(12122751-12122854)
chr8 (13-64)||(12122614-12122665)
chr8 (18-64)||(14692138-14692184)


Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 150 - 253
Target Start/End: Original strand, 12122751 - 12122854
Alignment:
Q  150 gataagctgggagaggggaaacacgtgagatagaggacagactatcaaaatagagggacataatgaagattactttagacagaatccataaaaccaataa 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  12122751 gataagctgggagaggggaaacacgtgagatagaggacagactatcaaaatagagagacataatgaagattactttagacagaatccataaaaccaataa 12122850  T
Q  250 cacc 253  Q
    ||||    
T  12122851 cacc 12122854  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 64
Target Start/End: Original strand, 12122614 - 12122665
Alignment:
Q  13 tccgtgattttcagcgtcaccaatttgctactgaagctgtatctattgaaca 64  Q
    |||| |||||||||| |||||| |||||||||||||||||||||||||||||    
T  12122614 tccgggattttcagcttcaccattttgctactgaagctgtatctattgaaca 12122665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 14692138 - 14692184
Alignment:
Q  18 gattttcagcgtcaccaatttgctactgaagctgtatctattgaaca 64  Q
    |||||||||| |||||| |||| ||||||||||||||| ||||||||    
T  14692138 gattttcagcttcaccattttgttactgaagctgtatccattgaaca 14692184  T

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