View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_210 (Length: 259)
Name: NF10104A_low_210
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_210 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 41311261 - 41311027
Alignment:
| Q |
1 |
ggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcaga |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311261 |
ggtcgttcttgaatggttctattcattggctggtttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcaga |
41311162 |
T |
|
| Q |
101 |
gactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41311161 |
gactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcct |
41311062 |
T |
|
| Q |
201 |
acacttaagatatgggtgatgcaagaatacacaat |
235 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
41311061 |
acacttaagatatgggtgatgcaagaatacgcaat |
41311027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 43164939 - 43164710
Alignment:
| Q |
1 |
ggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcaga |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||| || || |||||||||| |||||||||||||||| |||||||||||||| |||| ||||||| |
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| T |
43164939 |
ggtcgttcttgaatggttctattcattggctggtttataattatgagactgaaatagatgttattattgcctatgatttaaaggaaaagacaatgtcaga |
43164840 |
T |
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| Q |
101 |
gactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcct |
200 |
Q |
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| T |
43164839 |
gattgctcttccagatgatttttatagtgatttttctcccaacctttatgatttgttggtacttcgcggacttatcagcgtatggaatatggagatgtct |
43164740 |
T |
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| Q |
201 |
acacttaagatatgggtgatgcaagaatac |
230 |
Q |
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| T |
43164739 |
acacttaagatatgggtaatgcaagaatac |
43164710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 3e-38; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 30165666 - 30165883
Alignment:
| Q |
1 |
ggtcgttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcaga |
100 |
Q |
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|||||||||| ||||||||||||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||| |||| || |||| |
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| T |
30165666 |
ggtcgttcttcaatggttctattcattggctggtttataattatcagactgaaatggatgttattattgcctttgatttaaaggaagcgacaatggcaga |
30165765 |
T |
|
| Q |
101 |
gactgctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcct |
200 |
Q |
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|| ||||| ||| ||| || || | ||| |||||||||||||| |||||||| ||||||| |||||||||||| |||||| | || |
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| T |
30165766 |
gatagctcttccaaatgattgttctcgtg------------gaatttatgatttgttggtatttcatggacttatcagtgtatggaatgtggagaggtct |
30165853 |
T |
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| Q |
201 |
acacttaagatatgggtgatgcaagaatac |
230 |
Q |
| |
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||| |||||||||||||||||||||||||| |
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| T |
30165854 |
acagttaagatatgggtgatgcaagaatac |
30165883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 17 - 132
Target Start/End: Complemental strand, 28181080 - 28180965
Alignment:
| Q |
17 |
ttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagat |
116 |
Q |
| |
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|||||||||||||||| ||||| || || |||| |||| | |||||||||||||||||||||||||||||||||| ||||||| | ||||| |||||| |
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| T |
28181080 |
ttctattcattggctggtttataattatgagaccaaaattggtgttattattgcctttgatttaaaggaaatgacaatgtcagatatagctcttccagat |
28180981 |
T |
|
| Q |
117 |
ggtttttatagtgatt |
132 |
Q |
| |
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| ||||||||| |||| |
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| T |
28180980 |
gatttttatagggatt |
28180965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 235
Target Start/End: Complemental strand, 30125211 - 30124981
Alignment:
| Q |
5 |
gttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagagact |
104 |
Q |
| |
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|||||||||||| |||||||||||||| || || || || |||| | | |||||||||| |||||||||||||||||||| |||| ||||||| | |
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| T |
30125211 |
gttcttgaatgggactattcattggctggttcataatcatgagaccaacaaggatgttattgttgcctttgatttaaaggaagcgacaatgtcagaaata |
30125112 |
T |
|
| Q |
105 |
gctctcccagatggtttttatagtgattactctactagaatttatgatttgatggtatttggcagacttattagtgtatggaatatggagatgcctacac |
204 |
Q |
| |
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||||| ||| ||| |||||||| ||||||||| || | |||||||||| | |||||||| ||||||| ||| |||||| | | |||||| | || |
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| T |
30125111 |
gctcttccaaatgatttttataccgattactctcctgtagattatgatttgttagtatttggtggacttatcagtttatggattcttgagatggatgcag |
30125012 |
T |
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| Q |
205 |
ttaagatatgggtgatgcaagaatacacaat |
235 |
Q |
| |
|
|||||||| |||||||||| |||||| |||| |
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| T |
30125011 |
ttaagatacgggtgatgcatgaatacgcaat |
30124981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 30131165 - 30131068
Alignment:
| Q |
5 |
gttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagaga |
102 |
Q |
| |
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|||||||||||| |||||||||||||| ||||| || || |||| || |||||||||||| |||||| ||||||||||||||||| ||||||||| |
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| T |
30131165 |
gttcttgaatggggctattcattggctggtttataattatgagacaagaagggatgttattatagcctttaatttaaaggaaatgacaatgtcagaga |
30131068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 30120165 - 30120068
Alignment:
| Q |
5 |
gttcttgaatggttctattcattggctgatttatgatgataagactgaaatggatgttattattgcctttgatttaaaggaaatgacactgtcagaga |
102 |
Q |
| |
|
|||||||||||| ||||||||||| || || || || || |||| | ||| |||||||||||||||||||||||||||||| |||| | ||||||| |
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| T |
30120165 |
gttcttgaatggggctattcattgggtggttcataatcatgagaccaacatgaatgttattattgcctttgatttaaaggaaacgacaatatcagaga |
30120068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 30130967 - 30130934
Alignment:
| Q |
200 |
tacacttaagatatgggtgatgcaagaatacaca |
233 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
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|
| T |
30130967 |
tacagttaagatatgggtgatgcaagaatacaca |
30130934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 117
Target Start/End: Original strand, 21426642 - 21426703
Alignment:
| Q |
56 |
ggatgttattattgcctttgatttaaaggaaatgacactgtcagagactgctctcccagatg |
117 |
Q |
| |
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|||||||||||||||| ||||||||||||||| ||| ||||||||| ||||| ||||||| |
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| T |
21426642 |
ggatgttattattgcccttgatttaaaggaaacaacaatgtcagagatagctcttccagatg |
21426703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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