View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_213 (Length: 258)
Name: NF10104A_low_213
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_213 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 252
Target Start/End: Original strand, 40768443 - 40768687
Alignment:
| Q |
8 |
tgatatgaaagctgattttctgcactctgatactttagttgctttattccttttccaagccacaatatgcgatcacacctgcataatcttacgcataatt |
107 |
Q |
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| T |
40768443 |
tgatctgaaagctgattttctgcactctgatactttagttgctttattccttttccaagccacaatatgcgatcacacctgcataatcttacgcataatt |
40768542 |
T |
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| Q |
108 |
atagtgtctaattcatgcaacaacaaaaaattcacatgcttacacttaccatgctggagctctccttttttcaccttcttgtgtgttcccacccacatgt |
207 |
Q |
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| T |
40768543 |
atagtgtctaattcatgcaacaacaaaaaattcacatgcttgcacttaccatgctggagctctccttttttcaccttcttgtgtgttcccacccacatgt |
40768642 |
T |
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| Q |
208 |
ttatcagagttaaattcatatttgtatgtgggtgggaagtttatt |
252 |
Q |
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| T |
40768643 |
ttatcagagttaaattcatatttgtatgtgggtgggaagtttatt |
40768687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 40775075 - 40775318
Alignment:
| Q |
8 |
tgatatgaaagctgattttctgcactctgatactttagttgctttattccttttccaagccacaatatgcgatcacacctgcataatcttacgcataatt |
107 |
Q |
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|||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40775075 |
tgatctgaaagctgattttctgcactttgatacttaagttgctttattccttttccaagccacaatatgcgatcacacctgcataatcttacgcataatt |
40775174 |
T |
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| Q |
108 |
atagtgtctaattcatgcaacaacaaaaaattcacatgcttacacttaccatgctggagctctccttttttcaccttcttgtgtgttcccacccacatgt |
207 |
Q |
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| T |
40775175 |
atagtgtctaattcatgcaataacaaaacattcacatgcttgcacttaccatgctggagatctctttttttccccttcttgtgtgtcctcacccacatat |
40775274 |
T |
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| Q |
208 |
ttatcagagttaaattcatatttgtatgtgggtgggaagtttat |
251 |
Q |
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| T |
40775275 |
ttatctgagttaacttcatacttgtaagtaggtgggaagtttat |
40775318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 4679965 - 4679898
Alignment:
| Q |
24 |
tttctgcactctgatactttagttgctttattccttttccaagccacaatatgcgatcacacctgcat |
91 |
Q |
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||||||||| | ||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
4679965 |
tttctgcacgttcataatttagttgctttattccttttcctagccacaatattcgatcacacctgcat |
4679898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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