View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_22 (Length: 446)
Name: NF10104A_low_22
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Original strand, 31629858 - 31630261
Alignment:
| Q |
18 |
gaggatatatagtttataagaaaactagaaaactaagggaaatcaattatgtgagaaaatgtatattggaaagtggaaattatattgttaattacctttg |
117 |
Q |
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| T |
31629858 |
gaggatatatagtttataagaaaactagaaaactaagggaaatcaattctgtgagaaaatgtatattggaaagtggaaattatattgttaattacctttg |
31629957 |
T |
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| Q |
118 |
taaacagtgccgaaacctccctctccaagttctttagaagtgtggaaattgttagtagcttcttctagttcttcataggtaaacacctggacaccaaagt |
217 |
Q |
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| T |
31629958 |
taaacagtgccgaaacctccctctccaagttctttagaagtgtggaaattgttagtagcttcttctagttcttcataggtaaatacctggacaccaaagt |
31630057 |
T |
|
| Q |
218 |
agaaactctttggcattgtgctggttttggaagaggggtaagaaggaatactctgagacgaattagtagtggaggttagagtgccagtgtttgtgcctga |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |
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| T |
31630058 |
agaaactctttggcattgtgctggttttggaagaggggtaagaaggaatactctgagacgaattagtggtggaggttagagtgccggtgtttgtgcctga |
31630157 |
T |
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| Q |
318 |
ggtagtgcttgaaggaggaatgaattggtcattgcttattgatttcttggcatttttcctcctacgccgcaccacaaagcatgcaacaaggccaagaagg |
417 |
Q |
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|||||||||||||||||| ||| | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
31630158 |
ggtagtgcttgaaggaggcatgtacaggtcattgcttattggtttcttggcatttttcctccttcgccgcaccacaaagcatgcaacaaagccaagaagg |
31630257 |
T |
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| Q |
418 |
caaa |
421 |
Q |
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|||| |
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| T |
31630258 |
caaa |
31630261 |
T |
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