View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_220 (Length: 254)
Name: NF10104A_low_220
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_220 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 30810322 - 30810542
Alignment:
| Q |
19 |
cacaatctcccctcacattaaatgtgtatgtctacccctcttcatctactatattatata--aatacatagttaccttcaaatttcttttacactataaa |
116 |
Q |
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| T |
30810322 |
cacaatctcccctcacattaaatgtgtatgtctacctctcttcatctactatattatatataaatacaaagttaccttcaaatttcttttacactataaa |
30810421 |
T |
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| Q |
117 |
aactct--tcaacatttatttacttattctatcttcaatattcattagtccttcttttaacaaatgattataatataatattgacacaataatggctcgc |
214 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30810422 |
aactctattcaacatttatttacttattctatcttcaatattgattagtccttcttttaacaaatgattataatataatattgacacaacaatggctcgc |
30810521 |
T |
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| Q |
215 |
ggctatatccatgaacacatg |
235 |
Q |
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| T |
30810522 |
ggctatatccatgaacacatg |
30810542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 248
Target Start/End: Original strand, 30814920 - 30815028
Alignment:
| Q |
138 |
ttattctatcttcaatattcattagtccttcttttaacaaatgattataatataatattgacacaataatggctcgcggctatatccatgaacacatgat |
237 |
Q |
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||||| ||| ||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| |||| ||| || ||| || ||||| ||||||| |
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| T |
30814920 |
ttattttattttcaatattgattggtc-ttcttttaacaaatgattataatataatattgacacaacaatgactcacgactagat-tatgaatacatgat |
30815017 |
T |
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| Q |
238 |
atatcctaata |
248 |
Q |
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|||| |||||| |
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| T |
30815018 |
atatgctaata |
30815028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 137 - 222
Target Start/End: Original strand, 30820124 - 30820209
Alignment:
| Q |
137 |
cttattctatcttcaatattcattagtccttcttttaacaaatgattataatataatattgacacaataatggctcgcggctatat |
222 |
Q |
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||||||| | |||||||||| ||| |||||||||||||||||||| ||||||||||||||| ||||| | || ||| ||||||||| |
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| T |
30820124 |
cttattcgaacttcaatattgattggtccttcttttaacaaatgactataatataatattggcacaacagtgactcacggctatat |
30820209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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