View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10104A_low_221 (Length: 254)
Name: NF10104A_low_221
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_221 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 242
Target Start/End: Complemental strand, 52982938 - 52982703
Alignment:
| Q |
7 |
ctcgagacatattggttggaagatgaagatgagacactacctccaagccatggtagacaagactgtgatctgaaacataagatcgtacgcttatacagtc |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
52982938 |
ctcgagacatattggttggaagatgaagatgagacactacctccaagccatggtcgacaagaccgtgatctgaaacataagatcgtacgcttatacagtc |
52982839 |
T |
|
| Q |
107 |
tagccaacccttggcatgctcgtgtatgtctggaatcgaaagttggttggcttggctgggatctctgcgaaaaatcgtgggagcggtggaatcgtgcaaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
52982838 |
tagccaacccttggcatgctcgtgtatgtctggaatcgaaagttggttggcttggctgggatcgctgcgaaaaatcgtgggagcggtggaatcgtgcaaa |
52982739 |
T |
|
| Q |
207 |
catgttgtttccattattgggtttctcagatatatt |
242 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
|
|
| T |
52982738 |
catgtcgtttccattattgggtttctcagatatatt |
52982703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 55619062 - 55618926
Alignment:
| Q |
7 |
ctcgagacatattggttggaagatgaagatgagacactacctccaagccatggtagacaagactgtgatctgaaacataagatcgtacgcttatacagtc |
106 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| ||| || ||||| |||||||||||||| ||||||| |
|
|
| T |
55619062 |
ctcgagacatattggttggaagatgtagatgagacactacctctaggccatggtagactagatcccaattcgaaacgtaagatcgtacgctactacagtc |
55618963 |
T |
|
| Q |
107 |
tagccaacccttggcatgctcgtgtatgtctggaatc |
143 |
Q |
| |
|
| |||| |||||||| |||||||||| | |||||||| |
|
|
| T |
55618962 |
ttgccaccccttggcgtgctcgtgtacgactggaatc |
55618926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 7 - 143
Target Start/End: Complemental strand, 55626366 - 55626230
Alignment:
| Q |
7 |
ctcgagacatattggttggaagatgaagatgagacactacctccaagccatggtagacaagactgtgatctgaaacataagatcgtacgcttatacagtc |
106 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||| ||| || ||||| |||||||||||||| ||||||| |
|
|
| T |
55626366 |
ctcgagacatattggttggaagatgtagatgagacactacctctaggccatggtagactagatcccaattcgaaacgtaagatcgtacgctactacagtc |
55626267 |
T |
|
| Q |
107 |
tagccaacccttggcatgctcgtgtatgtctggaatc |
143 |
Q |
| |
|
| |||| |||||||| |||||||||| | |||||||| |
|
|
| T |
55626266 |
ttgccaccccttggcgtgctcgtgtacgactggaatc |
55626230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 143
Target Start/End: Complemental strand, 55657408 - 55657275
Alignment:
| Q |
10 |
gagacatattggttggaagatgaagatgagacactacctccaagccatggtagacaagactgtgatctgaaacataagatcgtacgcttatacagtctag |
109 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| | | ||| ||| || ||| || |||||| ||||||||||| || |||||||| | |
|
|
| T |
55657408 |
gagacatattggttggaagatgttgatgagacactacctctaggtcatcgtaaactagatcccaatttgaaacgtaagatcgtacactactacagtcttg |
55657309 |
T |
|
| Q |
110 |
ccaacccttggcatgctcgtgtatgtctggaatc |
143 |
Q |
| |
|
||| |||||||| |||||||||| | |||||||| |
|
|
| T |
55657308 |
ccaccccttggcgtgctcgtgtacgactggaatc |
55657275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 3671105 - 3671055
Alignment:
| Q |
10 |
gagacatattggttggaagatgaagatgagacactacctccaagccatggt |
60 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||| || ||||| |
|
|
| T |
3671105 |
gagacatattggttggaagatgaaggtgagacgctacctccaggcaatggt |
3671055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 54630481 - 54630519
Alignment:
| Q |
7 |
ctcgagacatattggttggaagatgaagatgagacacta |
45 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
54630481 |
ctcgagagatattggttggaagatgaagatgagacacta |
54630519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 10 - 45
Target Start/End: Complemental strand, 54860834 - 54860799
Alignment:
| Q |
10 |
gagacatattggttggaagatgaagatgagacacta |
45 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
54860834 |
gagacatattggttggaagatgaagacgagacacta |
54860799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 60
Target Start/End: Original strand, 13403784 - 13403837
Alignment:
| Q |
7 |
ctcgagacatattggttggaagatgaagatgagacactacctccaagccatggt |
60 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||| || ||||| |
|
|
| T |
13403784 |
ctcgagacatattggttggaagatgaagacgagacactaccaccaggcgatggt |
13403837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 7737104 - 7737040
Alignment:
| Q |
175 |
gaaaaatcgtgggagcggtggaatcgtgcaaacatgttgtttccattattgggtttctcagatat |
239 |
Q |
| |
|
||||||||||||||||||||||||| || || ||| | |||| |||||||||||||||||||| |
|
|
| T |
7737104 |
gaaaaatcgtgggagcggtggaatcatgtgaatctgtcgattcctttattgggtttctcagatat |
7737040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University