View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_222 (Length: 254)
Name: NF10104A_low_222
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_222 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 31025618 - 31025379
Alignment:
| Q |
4 |
acaattaaccctttattttaattctcaatttagaacttttcataaaataaat----gtaccaaaagcattcaatcaatttttagtgatgtgagtttgttc |
99 |
Q |
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| T |
31025618 |
acaattaaccctttattttaattctcaatttagaacttttcataaaataaattaatgtactaaaaactttcaatcaatttttagcgatatgagtttgttc |
31025519 |
T |
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| Q |
100 |
agagattcctcatagcaatgttgcatttgatatactaataaatatcgtttaatattagaattttaactaatatttcaatcagtatatgtagttactttta |
199 |
Q |
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| T |
31025518 |
acatattcctcgtagcaatgttgcatttgatatactaataaatatcgtttaatattagaattttaactaatatttgaatcagtatatgtagttactttta |
31025419 |
T |
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| Q |
200 |
ttgacgcaaatatctcttatagatagaacaagaggtgtat |
239 |
Q |
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| T |
31025418 |
ttgacgcaaatatctcttatagatagaacaagaggagtat |
31025379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 79
Target Start/End: Complemental strand, 31073784 - 31073711
Alignment:
| Q |
6 |
aattaaccctttattttaattctcaatttagaacttttcataaaataaatgtaccaaaagcattcaatcaattt |
79 |
Q |
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| T |
31073784 |
aattaaccaattattataattcttaatttataacttttcataaaataaatatgctaaaagcattcaatcaattt |
31073711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 31040751 - 31040719
Alignment:
| Q |
18 |
attttaattctcaatttagaacttttcataaaa |
50 |
Q |
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| T |
31040751 |
attttaattctcaatttagaacttttcataaaa |
31040719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 4 - 149
Target Start/End: Complemental strand, 33533958 - 33533813
Alignment:
| Q |
4 |
acaattaaccctttattttaattctcaatttagaacttttcataaaataaatgtaccaaaagcattcaatcaatttttagtgatgtgagtttgttcagag |
103 |
Q |
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|||||||||| |||||||| | ||||||||| |||||||||||||||||||||| |||||||||||||||| ||||| ||| ||||||||| || | |
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| T |
33533958 |
acaattaaccacatattttaaatttcaatttaggacttttcataaaataaatgtactaaaagcattcaatcaaattttaacgatatgagtttgtacacat |
33533859 |
T |
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| Q |
104 |
attcctcatagcaatgttgcatttgatatactaataaatatcgttt |
149 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
33533858 |
attcatcataaaaatgttgcatttgatatactaataaatatcgttt |
33533813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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