View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_223 (Length: 253)

Name: NF10104A_low_223
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_223
NF10104A_low_223
[»] chr7 (2 HSPs)
chr7 (5-162)||(8694745-8694902)
chr7 (161-253)||(8694627-8694719)
[»] chr3 (42 HSPs)
chr3 (14-139)||(11408698-11408823)
chr3 (14-139)||(27998494-27998619)
chr3 (5-157)||(28513401-28513553)
chr3 (19-157)||(28472379-28472517)
chr3 (19-157)||(28492420-28492558)
chr3 (164-253)||(11408875-11408964)
chr3 (161-253)||(28079482-28079574)
chr3 (14-149)||(27464435-27464570)
chr3 (14-137)||(28079308-28079431)
chr3 (14-137)||(28129854-28129977)
chr3 (175-253)||(28047509-28047587)
chr3 (5-137)||(28143773-28143905)
chr3 (14-134)||(28177940-28178060)
chr3 (161-245)||(28178105-28178189)
chr3 (5-138)||(27909693-27909826)
chr3 (5-90)||(27962763-27962848)
chr3 (164-253)||(28492297-28492386)
chr3 (14-162)||(17749388-17749536)
chr3 (14-162)||(19050708-19050856)
chr3 (164-244)||(27909879-27909959)
chr3 (164-242)||(28513289-28513367)
chr3 (24-161)||(26117292-26117429)
chr3 (24-161)||(26145296-26145433)
chr3 (164-253)||(28472256-28472345)
chr3 (172-244)||(27998667-27998739)
chr3 (172-253)||(28130039-28130120)
chr3 (173-253)||(28143968-28144048)
chr3 (24-161)||(26239556-26239693)
chr3 (175-251)||(17749272-17749348)
chr3 (175-251)||(19050592-19050668)
chr3 (175-246)||(27464311-27464382)
chr3 (24-162)||(18081280-18081418)
chr3 (28-83)||(28047349-28047404)
chr3 (21-91)||(26624394-26624464)
chr3 (31-134)||(26183763-26183866)
chr3 (175-242)||(27962960-27963027)
chr3 (24-86)||(27343891-27343953)
chr3 (24-90)||(27370189-27370255)
chr3 (24-81)||(18723481-18723538)
chr3 (25-149)||(27401421-27401545)
chr3 (31-134)||(26212370-26212473)
chr3 (25-91)||(18031534-18031600)
[»] chr4 (4 HSPs)
chr4 (14-157)||(9330325-9330468)
chr4 (14-157)||(9384108-9384251)
chr4 (175-251)||(9330204-9330280)
chr4 (175-251)||(9383987-9384063)
[»] chr5 (2 HSPs)
chr5 (19-157)||(26027270-26027408)
chr5 (175-234)||(26027166-26027225)
[»] scaffold0067 (2 HSPs)
scaffold0067 (5-142)||(23851-23988)
scaffold0067 (167-253)||(24040-24126)
[»] scaffold1344 (1 HSPs)
scaffold1344 (24-86)||(578-640)
[»] scaffold0854 (1 HSPs)
scaffold0854 (24-81)||(4533-4590)
[»] scaffold0043 (1 HSPs)
scaffold0043 (24-81)||(73305-73362)


Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 8694902 - 8694745
Alignment:
5 gactgagatgaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcat 104  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
8694902 gactaagaagaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcatttaagatgcat 8694803  T
105 ttcacaactacaatgcctcgtagacactaagcatattgattctcatgtatcaattgtc 162  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
8694802 ttcacaactacaatgcctcttagacactaagcatattgattctcatgtatcaattgtc 8694745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 161 - 253
Target Start/End: Complemental strand, 8694719 - 8694627
Alignment:
161 tcaaaggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgta 253  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
8694719 tcaaaggaatggataatttggaagaattgtgcaatggtcctctttcctttgactctctgaaaagtttagagaagctgtacatcaaggattgta 8694627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 11408698 - 11408823
Alignment:
14 gaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaact 113  Q
    |||||| ||||| ||||||||||||||||||||| || |||||| | ||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
11408698 gaatcgtgggggaatggagaaatatcatacctgaaatggttcctttagatcaaggtatgaatgatctagttgagcttcatttaagatgcatttcacaact 11408797  T
114 acaatgcctcgtagacactaagcata 139  Q
    | |||||||| | ||||||| |||||    
11408798 aaaatgcctcattgacactatgcata 11408823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 139
Target Start/End: Original strand, 27998494 - 27998619
Alignment:
14 gaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaact 113  Q
    |||| ||||||||| ||||||||||||||||||||||  ||||||| | ||||||||||||||||||||||||||||  ||| |||| |||||||||| |    
27998494 gaatggaggggggagggagaaatatcatacctgagatgattcctatgggtcatggtatgaatgatctagttgagcttgatttgagatccatttcacaatt 27998593  T
114 acaatgcctcgtagacactaagcata 139  Q
    |||||||||| | |||||||||||||    
27998594 acaatgcctcattgacactaagcata 27998619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 157
Target Start/End: Complemental strand, 28513553 - 28513401
Alignment:
5 gactgagatgaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcat 104  Q
    |||| ||| |||| |||||||||||||||||||| || ||||| ||||||||||| |||  |||||||||||||||||| ||||||  ||| ||||||||    
28513553 gactaagaagaatggaggggggatggagaaatatgattcctgaaattgttcctatggattgtggtatgaatgatctagtcgagcttactttgagatgcat 28513454  T
105 ttcacaactacaatgcctcgtagacactaagcatattgattctcatgtatcaa 157  Q
    ||||||||||||||||||| | ||||| || ||||| || ||||| |||||||    
28513453 ttcacaactacaatgcctcattgacaccaaacatatcgaatctcaagtatcaa 28513401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 28472517 - 28472379
Alignment:
19 gaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaat 118  Q
    |||||||||||||||||||| || ||||||||||||||||| || |||||||||||||||||||| |||||| |||| ||  | ||||||||||||||||    
28472517 gaggggggatggagaaatatgatgcctgagattgttcctatggaccatggtatgaatgatctagtcgagcttagtttgagtagtatttcacaactacaat 28472418  T
119 gcctcgtagacactaagcatattgattctcatgtatcaa 157  Q
    ||||| | |||||||| |||| ||| ||||  |||||||    
28472417 gcctcattgacactaaacatactgaatctctagtatcaa 28472379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 28492558 - 28492420
Alignment:
19 gaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaat 118  Q
    |||||||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||  ||||| |||| ||  | ||||||||||||||||    
28492558 gaggggggatggagaaatatgatgcctgagattgttcctatggatcatggtatgaatgatctagtcaagcttagtttgagtagtatttcacaactacaat 28492459  T
119 gcctcgtagacactaagcatattgattctcatgtatcaa 157  Q
    ||||| | |||||||| |||| ||| ||||  |||||||    
28492458 gcctcattgacactaaacatactgaatctctagtatcaa 28492420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 164 - 253
Target Start/End: Original strand, 11408875 - 11408964
Alignment:
164 aaggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgta 253  Q
    ||||||||||||||||||||||||||| |||||   |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
11408875 aaggaatggataatttggaagaattgttcaatggctctctttcctttgactctctgaacagtttagagaagctgtccatcaaggattgta 11408964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 161 - 253
Target Start/End: Original strand, 28079482 - 28079574
Alignment:
161 tcaaaggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgta 253  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||| |||||||||  |||||||    
28079482 tcaaaggaatggataatttggaagaattgttcaatggtcctctttcctttgactctctgaacagtttagagaagttgtccatcagtgattgta 28079574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 149
Target Start/End: Complemental strand, 27464570 - 27464435
Alignment:
14 gaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaact 113  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||  ||| | || |||||||||  |    
27464570 gaatggaggggggatggagaaacatcatacctgagattgttcctatggatcatggtatgaatgatctagtcgagcttaatttgatatccatttcacagtt 27464471  T
114 acaatgcctcgtagacactaagcatattgattctca 149  Q
     || |||||| | |||||| |||||| |||||||||    
27464470 gcactgcctcattgacactcagcatactgattctca 27464435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 28079308 - 28079431
Alignment:
14 gaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaact 113  Q
    ||||||| ||||| |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||   || |||| |||||||||| |    
28079308 gaatcgaaggggggtggagaaatatcatacctgatattgttccaatggatcatggtatgaatgatctagttgagcttgaattgagatccatttcacaatt 28079407  T
114 acaatgcctcgtagacactaagca 137  Q
    ||| |||||| | |||||||||||    
28079408 acagtgcctcattgacactaagca 28079431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 28129854 - 28129977
Alignment:
14 gaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaact 113  Q
    |||||||||||| ||||| ||| |||||||||||||||||||| || ||||| |||||||||||| ||||||||||||||||  ||| |||||||||| |    
28129854 gaatcgagggggaatggaaaaacatcatacctgagattgttcccatggatcaaggtatgaatgatatagttgagcttcgtttgggatccatttcacaatt 28129953  T
114 acaatgcctcgtagacactaagca 137  Q
    ||| |||||| | |||||||||||    
28129954 acagtgcctcattgacactaagca 28129977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 175 - 253
Target Start/End: Original strand, 28047509 - 28047587
Alignment:
175 aatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgta 253  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||    
28047509 aatttggaagaattgtgcaatggtcctctttcctttgactctctgaacagtttagaggagctgtccatcaaggattgta 28047587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 137
Target Start/End: Original strand, 28143773 - 28143905
Alignment:
5 gactgagatgaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcat 104  Q
    |||| ||| |||||||||||| ||||| ||| |||||||||||||||||||| || ||||| |||||||||||| ||||||||||||||||  ||| |||    
28143773 gactaagaagaatcgagggggaatggaaaaacatcatacctgagattgttcccatggatcaaggtatgaatgatatagttgagcttcgtttgggatccat 28143872  T
105 ttcacaactacaatgcctcgtagacactaagca 137  Q
    ||||||| |||| |||||| | || ||||||||    
28143873 ttcacaattacagtgcctcattgatactaagca 28143905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 28177940 - 28178060
Alignment:
14 gaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaact 113  Q
    ||||||||||||| |||||||| ||| ||||||||||||||||| | ||||||||||||||||||||| | |||||| |||| |||| |||||||||| |    
28177940 gaatcgagggggggtggagaaacatcgtacctgagattgttcctctggatcatggtatgaatgatctaatcgagcttggtttgagatccatttcacaatt 28178039  T
114 acaatgcctcgtagacactaa 134  Q
    ||| |||||| | ||||||||    
28178040 acagtgcctcattgacactaa 28178060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 28178105 - 28178189
Alignment:
161 tcaaaggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaa 245  Q
    ||||||||||||||||||| |||||||||| ||||| |||| ||||||||||||||||||| |||||||||||||||||||||||    
28178105 tcaaaggaatggataatttagaagaattgttcaatggtcctgtttcctttgactctctgaacagtttagagaagctgtccatcaa 28178189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 27909693 - 27909826
Alignment:
5 gactgagatgaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcat 104  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||  ||||| |  | |||||||||||||||||||||||||||   || |||| |||    
27909693 gactaagaagaatcgaggggggatggagaaatatcatacctgagatgattcctttgaaacatggtatgaatgatctagttgagcttgaattgagatccat 27909792  T
105 ttcacaactacaatgcctcgtagacactaagcat 138  Q
    ||||||| |||| |||||  | ||||||||||||    
27909793 ttcacaattacagtgccttattgacactaagcat 27909826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 27962763 - 27962848
Alignment:
5 gactgagatgaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagctt 90  Q
    |||| ||| |||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||    
27962763 gactaagaagaatggaggggggatggagaaatatcatacctgagattgttcctatggagcatggtatgaatgatctagtcgagctt 27962848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 28492386 - 28492297
Alignment:
164 aaggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgta 253  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||||||| ||||||||  |||||||||    
28492386 aaggaatggataatttggaagaattgttcaaaggtcctctttcctttgactctctgaacagtttagagaatctgtccattgaggattgta 28492297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 17749536 - 17749388
Alignment:
14 gaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaact 113  Q
    |||||||||||||||||||||||||||||||||| ||||||||  |  |||| |||||||||||| ||||||||||||  |||  ||  |||||||||||    
17749536 gaatcgaggggggatggagaaatatcatacctgatattgttccgttgaatcaaggtatgaatgatttagttgagcttcaattacaatttatttcacaact 17749437  T
114 acaatgcctcgtagacactaagcatattgattctcatgtatcaattgtc 162  Q
     |  |||||| | |||||||||||||||| |||||| ||| ||| ||||    
17749436 gcggtgcctcattgacactaagcatattgcttctcaagtaccaaatgtc 17749388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 14 - 162
Target Start/End: Complemental strand, 19050856 - 19050708
Alignment:
14 gaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaact 113  Q
    |||||||||||||||||||||||||||||||||| ||||||||  |  |||| |||||||||||| ||||||||||||  |||  ||  |||||||||||    
19050856 gaatcgaggggggatggagaaatatcatacctgatattgttccgttgaatcaaggtatgaatgatttagttgagcttcaattacaatttatttcacaact 19050757  T
114 acaatgcctcgtagacactaagcatattgattctcatgtatcaattgtc 162  Q
     |  |||||| | |||||||||||||||| |||||| ||| ||| ||||    
19050756 gcggtgcctcattgacactaagcatattgcttctcaagtaccaaatgtc 19050708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 27909879 - 27909959
Alignment:
164 aaggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatca 244  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||| | ||||||||||    
27909879 aaggaatggataatttggaagaattgttcaatggtcctctttcctttgactctctgaacagtttagaggatctgtccatca 27909959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 164 - 242
Target Start/End: Complemental strand, 28513367 - 28513289
Alignment:
164 aaggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccat 242  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||| ||||||||||| ||||||||    
28513367 aaggaatggataatttggaagaattgttcaaaggtcctctttcctttgactctctgaacagtttagagaatctgtccat 28513289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 26117429 - 26117292
Alignment:
24 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 123  Q
    |||||||| |||| |||| || |||||||||||||| ||| | ||||||||||||||| |||||||| ||||  ||   |||||||||||||| |||||     
26117429 gggatggataaatctcatgccagagattgttcctatagatgaaggtatgaatgatctaattgagctttgtttgggagaaatttcacaactacagtgcctt 26117330  T
124 gtagacactaagcatattgattctcatgtatcaattgt 161  Q
    ||||||||||| |||||| ||||||| ||| |||||||    
26117329 gtagacactaaacatattaattctcaagtaccaattgt 26117292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 26145433 - 26145296
Alignment:
24 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 123  Q
    |||||| |||||| |||| || ||||| |||||||| ||||| ||||||||||||||| ||||||||| | | |||   |||||||||||||| |||||     
26145433 gggatgtagaaatctcatgcccgagatggttcctatagatcaaggtatgaatgatctaattgagcttcatctgagagaaatttcacaactacagtgccta 26145334  T
124 gtagacactaagcatattgattctcatgtatcaattgt 161  Q
    ||||||||||| |||||| ||||||| ||| |||||||    
26145333 gtagacactaaacatattaattctcaagtaccaattgt 26145296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 164 - 253
Target Start/End: Complemental strand, 28472345 - 28472256
Alignment:
164 aaggaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgta 253  Q
    ||||||||||||||||||||||||||| ||  | |||||||||||||||||||||||| ||||||||||| ||||||||  |||||||||    
28472345 aaggaatggataatttggaagaattgttcagcggtcctctttcctttgactctctgaacagtttagagaatctgtccattgaggattgta 28472256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 27998667 - 27998739
Alignment:
172 gataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatca 244  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||| |||||    
27998667 gataatttggaagaattatgcaatggtcctctttcctttgactctctgaacagtttagagaagctgtacatca 27998739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 172 - 253
Target Start/End: Original strand, 28130039 - 28130120
Alignment:
172 gataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgta 253  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| || || |||||||||  |||||||    
28130039 gataatttggaagaattgttcaatggtcctctttcctttgactctctgaaaagtttaaaggagttgtccatcagtgattgta 28130120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 173 - 253
Target Start/End: Original strand, 28143968 - 28144048
Alignment:
173 ataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgta 253  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||   |||||||||| |||||||| | |||||||    
28143968 ataatttggaagaattgttcaatggtcctctttcctttgactctctgaactttttagagaagttgtccatccaagattgta 28144048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 161
Target Start/End: Complemental strand, 26239693 - 26239556
Alignment:
24 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 123  Q
    |||||||| |||| |||| || |||||||||||||| ||| | ||||||||||||||| || |||||| | | | |   |||||||||||||| | |||     
26239693 gggatggataaatctcatgccagagattgttcctatagatgaaggtatgaatgatctaattaagcttcatctgaaagaaatttcacaactacagtacctt 26239594  T
124 gtagacactaagcatattgattctcatgtatcaattgt 161  Q
    ||||||||||| |||||| ||||||| ||| |||||||    
26239593 gtagacactaaacatattaattctcaagtaccaattgt 26239556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 17749348 - 17749272
Alignment:
175 aatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattg 251  Q
    |||||| ||||||||| |||||  |||||||| ||||||||||| || |||||||||||| ||||||||||||||||    
17749348 aatttgaaagaattgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattg 17749272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 19050668 - 19050592
Alignment:
175 aatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattg 251  Q
    |||||| ||||||||| |||||  |||||||| ||||||||||| || |||||||||||| ||||||||||||||||    
19050668 aatttgaaagaattgttcaatggccctctttcttttgactctctaaacagtttagagaagttgtccatcaaggattg 19050592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 27464382 - 27464311
Alignment:
175 aatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaag 246  Q
    |||||||||||||||| ||||| |||| |||||||||||||||| || | |||||||||| |||||||||||    
27464382 aatttggaagaattgttcaatggtcctgtttcctttgactctctaaacaatttagagaagttgtccatcaag 27464311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 18081418 - 18081280
Alignment:
24 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctc 123  Q
    ||||||||||||| |||| || || ||||||||||| ||||| ||||||||||||||| ||||||||| ||| | ||    |||||||||||| | ||||    
18081418 gggatggagaaatctcatgccagaaattgttcctatagatcaaggtatgaatgatctaattgagcttcatttgaaatatgattcacaactacagtacctc 18081319  T
124 gtagacactaagcatattgattctcatgtatcaattgtc 162  Q
     || ||| | | |||||||||||||| ||| ||| ||||    
18081318 atatacattgaacatattgattctcaagtaccaactgtc 18081280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 28 - 83
Target Start/End: Original strand, 28047349 - 28047404
Alignment:
28 tggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagt 83  Q
    |||||||||||||||||||| ||||||||| | ||||||||||||||| |||||||    
28047349 tggagaaatatcatacctgatattgttcctttggatcatggtatgaataatctagt 28047404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 26624394 - 26624464
Alignment:
21 ggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttc 91  Q
    |||||||||||||||| |||| ||||||||||||||||| || |  |||||||||||| | ||||||||||    
26624394 ggggggatggagaaatctcatgcctgagattgttcctatagaactaggtatgaatgatattgttgagcttc 26624464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 26183866 - 26183763
Alignment:
31 agaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagaca 130  Q
    |||||| |||| || ||||| |||||||| || || ||||||||||||||| ||||||||| |||   | | | |||||||||||| ||||| |||||||    
26183866 agaaatctcatgccagagatggttcctatagaacaaggtatgaatgatctaattgagcttcatttggaaggtagttcacaactacagtgccttgtagaca 26183767  T
131 ctaa 134  Q
    ||||    
26183766 ctaa 26183763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 27962960 - 27963027
Alignment:
175 aatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccat 242  Q
    |||||||||||||||| ||||| |||| | |||||||||||| |||| ||||||||||| || |||||    
27962960 aatttggaagaattgttcaatggtcctttgtcctttgactctttgaacagtttagagaatctttccat 27963027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 27343891 - 27343953
Alignment:
24 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttga 86  Q
    ||||||||||||| |||| |||| |||| ||||||| ||| ||||||||||||||||| ||||    
27343891 gggatggagaaatctcatgcctgggattcttcctatggataatggtatgaatgatctaattga 27343953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 90
Target Start/End: Original strand, 27370189 - 27370255
Alignment:
24 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagctt 90  Q
    ||||||||||||| |||| |||| |||| ||||||| ||| ||||||||||| ||||| ||||||||    
27370189 gggatggagaaatctcatgcctgggattcttcctatagataatggtatgaataatctaattgagctt 27370255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 18723538 - 18723481
Alignment:
24 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatcta 81  Q
    ||||||||||||| |||| |||| ||||||| |||| ||| |||||||||||||||||    
18723538 gggatggagaaatctcatgcctgggattgtttctatagataatggtatgaatgatcta 18723481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 27401545 - 27401421
Alignment:
25 ggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcg 124  Q
    |||||||||||| |||| |||||| | |||||||| ||  |||| ||||||||||| ||| ||||||   |   |||   |||| ||||||| ||||||     
27401545 ggatggagaaatctcatgcctgaggtggttcctatagaaaatggcatgaatgatcttgttaagcttcacctgtcatggggttcagaactacagtgcctca 27401446  T
125 tagacactaagcatattgattctca 149  Q
    |||||||||| ||||||||||||||    
27401445 tagacactaaacatattgattctca 27401421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 26212473 - 26212370
Alignment:
31 agaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaatgcctcgtagaca 130  Q
    |||||| |||| || ||||| ||||||||  | || ||||||||||||||| ||||||||| |||   | | | |||||||||||| ||||| |||||||    
26212473 agaaatctcatgccagagatggttcctataaaacaaggtatgaatgatctaattgagcttcatttggaaggtagttcacaactacagtgccttgtagaca 26212374  T
131 ctaa 134  Q
    ||||    
26212373 ctaa 26212370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 18031600 - 18031534
Alignment:
25 ggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttc 91  Q
    |||||||||||| |||| || ||||| |||||||| ||  ||||||||||||||||  |||||||||    
18031600 ggatggagaaatctcatgccagagatggttcctatagaaaatggtatgaatgatcttcttgagcttc 18031534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 9330468 - 9330325
Alignment:
14 gaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaact 113  Q
    |||||||| |||  |||||||| ||||||||||||||||||||| | ||||| |||||||||||||| | |||||||| ||| |||||||||| ||||||    
9330468 gaatcgagagggtgtggagaaacatcatacctgagattgttcctttggatcaaggtatgaatgatctggctgagcttcatttgagatgcattttacaact 9330369  T
114 acaatgcctcgtagacactaagcatattgattctcatgtatcaa 157  Q
    | |||||||| | ||||||| ||||| ||| ||||| |||||||    
9330368 aaaatgcctcattgacactacgcatactgaatctcaagtatcaa 9330325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 9384251 - 9384108
Alignment:
14 gaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaact 113  Q
    |||||||| |||  |||||||| ||||||||||||||||||||| | ||||| |||||||||||||| | |||||||| ||| |||||||||| ||||||    
9384251 gaatcgagagggtgtggagaaacatcatacctgagattgttcctttggatcaaggtatgaatgatctggctgagcttcatttgagatgcattttacaact 9384152  T
114 acaatgcctcgtagacactaagcatattgattctcatgtatcaa 157  Q
    | |||||||| | ||||||| ||||| ||| ||||| |||||||    
9384151 aaaatgcctcattgacactacgcatactgaatctcaagtatcaa 9384108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 9330280 - 9330204
Alignment:
175 aatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattg 251  Q
    |||||||||||||||| ||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
9330280 aatttggaagaattgttcaatggtcctctttcctttgactctttgaacagtttagagaagctgtccatcaaggattg 9330204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 9384063 - 9383987
Alignment:
175 aatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattg 251  Q
    |||||||||||||||| ||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
9384063 aatttggaagaattgttcaatggtcctctttcctttgactctttgaacagtttagagaagctgtccatcaaggattg 9383987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 157
Target Start/End: Complemental strand, 26027408 - 26027270
Alignment:
19 gaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcatttcacaactacaat 118  Q
    ||||| || |||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| ||||||  ||| |||| |||||||||| |||| |    
26027408 gagggagggtggagaaatatcatgcctgagattgttcatatggatcatggtatgaatgatctagtcgagctttctttgagatccatttcacaattacagt 26027309  T
119 gcctcgtagacactaagcatattgattctcatgtatcaa 157  Q
     |||| |  ||||||||| || ||| ||||| |||||||    
26027308 acctcattaacactaagcctactgaatctcaagtatcaa 26027270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 26027225 - 26027166
Alignment:
175 aatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaag 234  Q
    |||||||||||||||| ||||| ||||||||||||||||||||| || ||||||||||||    
26027225 aatttggaagaattgttcaatggtcctctttcctttgactctctcaacagtttagagaag 26027166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 142
Target Start/End: Original strand, 23851 - 23988
Alignment:
5 gactgagatgaatcgaggggggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttgagcttcgtttaagatgcat 104  Q
    |||| ||| ||||||||  ||||||||||||| |||||||  |||||||| |||| ||||| |||||||| ||| ||||||| ||| |||| || |||||    
23851 gactaagaagaatcgagacgggatggagaaatctcataccccagattgtttctatggatcaaggtatgaaagatatagttgaacttagtttgagttgcat 23950  T
105 ttcacaactacaatgcctcgtagacactaagcatattg 142  Q
    ||||||||| |  | |||||| ||||| ||| ||||||    
23951 ttcacaacttcggtacctcgttgacacgaaggatattg 23988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 253
Target Start/End: Original strand, 24040 - 24126
Alignment:
167 gaatggataatttggaagaattgtgcaatgatcctctttcctttgactctctgaaaagtttagagaagctgtccatcaaggattgta 253  Q
    ||||||| |||||||||||| |||  |||| |||  |||||||||||| |||||| | |||| ||||| | || |||||||||||||    
24040 gaatggaaaatttggaagaactgtttaatggtcccgtttcctttgactttctgaagaatttacagaagatatcaatcaaggattgta 24126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1344 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1344
Description:

Target: scaffold1344; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 578 - 640
Alignment:
24 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatctagttga 86  Q
    ||||||||||||| |||| |||| |||| ||||||| ||| ||||||||||||||||| ||||    
578 gggatggagaaatctcatgcctgggattattcctatagataatggtatgaatgatctaattga 640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0854 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0854
Description:

Target: scaffold0854; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 4590 - 4533
Alignment:
24 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatcta 81  Q
    ||||||||||||| |||| |||| |||||||||||| ||| ||||||||||| |||||    
4590 gggatggagaaatctcatgcctgggattgttcctatagataatggtatgaattatcta 4533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 81
Target Start/End: Complemental strand, 73362 - 73305
Alignment:
24 gggatggagaaatatcatacctgagattgttcctatcgatcatggtatgaatgatcta 81  Q
    ||||||||||||| |||| |||| ||||||| |||| ||| |||||||||||||||||    
73362 gggatggagaaatctcatgcctgggattgtttctatagataatggtatgaatgatcta 73305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University