View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_225 (Length: 252)

Name: NF10104A_low_225
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_225
NF10104A_low_225
[»] chr7 (11 HSPs)
chr7 (1-252)||(35939190-35939445)
chr7 (18-164)||(35977324-35977470)
chr7 (18-164)||(35998736-35998882)
chr7 (18-164)||(35946661-35946807)
chr7 (37-164)||(35957888-35958015)
chr7 (29-171)||(32727463-32727605)
chr7 (29-163)||(35981901-35982035)
chr7 (29-163)||(36003313-36003447)
chr7 (8-113)||(36217707-36217812)
chr7 (38-113)||(36221698-36221773)
chr7 (56-109)||(35954965-35955018)
[»] chr1 (2 HSPs)
chr1 (1-166)||(18125572-18125737)
chr1 (2-166)||(18117920-18118084)
[»] chr2 (1 HSPs)
chr2 (1-174)||(26328679-26328852)


Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 35939190 - 35939445
Alignment:
Q  1 ttttgcatcctactgtgccaactgttaccaaatctttcaactcaatccattttgaacgatcatc----attccatatgtcatctaacacgagtaaaaact 96  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||    
T  35939190 ttttgcattctactgtgccaacttttatcaaatctttcaactcaatccattttgaacgatcatccatcattccatatgtcatctaacacgagtaaaaact 35939289  T
Q  97 tttgaccagaaagtttagatctcatacgacttacaagctgcacaatatctaagttgttaatgttttcttgctgagaaaaactaaccgttggagttggact 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35939290 tttgaccagaaagtttagatctcatacgacttacaagctgcacaatatctaagttgttaatgttttcttgctgagaaaaactaaccgttggagttggact 35939389  T
Q  197 agaagtaaatgtggaagcgaagcccgagttgattattttaataattatctgcctga 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35939390 agaagtaaatgtggaagcgaagcccgagttgattattttaataattatctgcctga 35939445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 35977324 - 35977470
Alignment:
Q  18 ccaactgttaccaaatctttcaactcaatccattttgaacgatcatcattccatatgtcatctaacacgagtaaaaacttttgaccagaaagtttagatc 117  Q
    |||||| ||| |||||||||||| |||| ||| |||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||   ||    
T  35977324 ccaacttttatcaaatctttcaattcaagccactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgaccagaaagtttttgtc 35977423  T
Q  118 tcatacgacttacaagctgcacaatatctaagttgttaatgttttct 164  Q
    | | ||||||||| || |||||||||||||||||||| |||||||||    
T  35977424 tgagacgacttactagttgcacaatatctaagttgttgatgttttct 35977470  T

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Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 35998736 - 35998882
Alignment:
Q  18 ccaactgttaccaaatctttcaactcaatccattttgaacgatcatcattccatatgtcatctaacacgagtaaaaacttttgaccagaaagtttagatc 117  Q
    |||||| ||| |||||||||||| |||| ||| |||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||   ||    
T  35998736 ccaacttttatcaaatctttcaattcaagccactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgaccagaaagtttttgtc 35998835  T
Q  118 tcatacgacttacaagctgcacaatatctaagttgttaatgttttct 164  Q
    | | ||||||||| || |||||||||||||||||||| |||||||||    
T  35998836 tgagacgacttactagttgcacaatatctaagttgttgatgttttct 35998882  T

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Target: chr7; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 35946661 - 35946807
Alignment:
Q  18 ccaactgttaccaaatctttcaactcaatccattttgaacgatcatcattccatatgtcatctaacacgagtaaaaacttttgaccagaaagtttagatc 117  Q
    |||||| ||| |||||||||||| |||| ||| |||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||   ||    
T  35946661 ccaacttttatcaaatctttcaattcaagccactttgcacgatcatcattccatacgtcatctaacacgactaaaaacttttgaccagaaagtttttgtc 35946760  T
Q  118 tcatacgacttacaagctgcacaatatctaagttgttaatgttttct 164  Q
    | | ||||||||| || ||||||||||||||||||||  ||||||||    
T  35946761 ttagacgacttactagttgcacaatatctaagttgttggtgttttct 35946807  T

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Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 164
Target Start/End: Original strand, 35957888 - 35958015
Alignment:
Q  37 tcaactcaatccattttgaacgatcatcattccatatgtcatctaacacgagtaaaaacttttgaccagaaagtttagatctcatacgacttacaagctg 136  Q
    |||| |||| ||| |||| ||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||   | | | ||||||||| |||||    
T  35957888 tcaattcaagccactttgcacgatcatcattccatacgtcatctaacacaactaaaaacttttgaccagaaagtttttgtttgagacgacttactagctg 35957987  T
Q  137 cacaatatctaagttgttaatgttttct 164  Q
    |||||||||||||||||| |||||||||    
T  35957988 cacaatatctaagttgttgatgttttct 35958015  T

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Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 29 - 171
Target Start/End: Original strand, 32727463 - 32727605
Alignment:
Q  29 caaatctttcaactcaatccattttgaacgatcatcattccatatgtcatctaacacgagtaaaaacttttgaccagaaagtttagatctcatacgactt 128  Q
    ||||||| |||||||||||||||||| |||||||||||||||||| || ||||  || || |||||||| ||||||| |||||||  |||   |||||||    
T  32727463 caaatctatcaactcaatccattttgcacgatcatcattccatatatcgtctaggacaagcaaaaacttctgaccagcaagtttatgtctttaacgactt 32727562  T
Q  129 acaagctgcacaatatctaagttgttaatgttttcttgctgag 171  Q
       |||||| ||||||| |||||||| ||||||||||| ||||    
T  32727563 tgtagctgctcaatatcaaagttgttgatgttttcttggtgag 32727605  T

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Target: chr7; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 35981901 - 35982035
Alignment:
Q  29 caaatctttcaactcaatccattttgaacgatcatcattccatatgtcatctaacacgagtaaaaacttttgaccagaaagtttagatctcatacgactt 128  Q
    |||||||||||||||||||||||||| ||||||||||||||  |  ||||| ||||| |||||||||||||| |  |||||||||  ||| | |||| ||    
T  35981901 caaatctttcaactcaatccattttgcacgatcatcattccgcacatcatccaacacaagtaaaaacttttgtctggaaagtttatgtcttagacgagtt 35982000  T
Q  129 acaagctgcacaatatctaagttgttaatgttttc 163  Q
       || ||| |||||||||||||||||| ||||||    
T  35982001 tgtagttgctcaatatctaagttgttaaggttttc 35982035  T

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Target: chr7; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 163
Target Start/End: Original strand, 36003313 - 36003447
Alignment:
Q  29 caaatctttcaactcaatccattttgaacgatcatcattccatatgtcatctaacacgagtaaaaacttttgaccagaaagtttagatctcatacgactt 128  Q
    |||||||||||||||||||||||||| ||||||||||||||  |  ||||| ||||| |||||||||||||| |  |||||||||  ||| | |||| ||    
T  36003313 caaatctttcaactcaatccattttgcacgatcatcattccgcacatcatccaacacaagtaaaaacttttgtctggaaagtttatgtcttagacgagtt 36003412  T
Q  129 acaagctgcacaatatctaagttgttaatgttttc 163  Q
       || ||| |||||||||||||||||| ||||||    
T  36003413 tgtagttgctcaatatctaagttgttaaggttttc 36003447  T

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Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 36217812 - 36217707
Alignment:
Q  8 tcctactgtgccaactgttaccaaatctttcaactcaatccattttgaacgatcatcattccatatgtcatctaacacgagtaaaaacttttgaccagaa 107  Q
    ||||||||  |||||| | | |||||||| ||||||||||||||||| |||||||||||||||||  ||||||| |||||| | ||||||||| |||||     
T  36217812 tcctactgcaccaactttgatcaaatcttccaactcaatccattttgcacgatcatcattccatacatcatctagcacgaggataaacttttggccagat 36217713  T
Q  108 agttta 113  Q
    ||||||    
T  36217712 agttta 36217707  T

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Target: chr7; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 38 - 113
Target Start/End: Complemental strand, 36221773 - 36221698
Alignment:
Q  38 caactcaatccattttgaacgatcatcattccatatgtcatctaacacgagtaaaaacttttgaccagaaagttta 113  Q
    ||||||||||||||||| ||| |||||||||||||| |||||||  | ||| | ||||||||||||||||||||||    
T  36221773 caactcaatccattttgcacggtcatcattccatatatcatctaggatgaggataaacttttgaccagaaagttta 36221698  T

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Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 109
Target Start/End: Original strand, 35954965 - 35955018
Alignment:
Q  56 acgatcatcattccatatgtcatctaacacgagtaaaaacttttgaccagaaag 109  Q
    ||||| |||||||||||  |||||||||||||||||||| ||||||||||||||    
T  35954965 acgattatcattccatacatcatctaacacgagtaaaaagttttgaccagaaag 35955018  T

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Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 18125572 - 18125737
Alignment:
Q  1 ttttgcatcctactgtgccaactgttaccaaatctttcaactcaatccattttgaacgatcatcattccatatgtcatctaacacgagtaaaaacttttg 100  Q
    |||||| ||||  |||||||||| ||| ||||||||||||||| ||||| |||| |||||||||||||||||  ||||||||||| ||||||||||||||    
T  18125572 ttttgcttcctcttgtgccaacttttatcaaatctttcaactcgatccactttgcacgatcatcattccatacatcatctaacacaagtaaaaacttttg 18125671  T
Q  101 accagaaagtttagatctcatacgacttacaagctgcacaatatctaagttgttaatgttttcttg 166  Q
    ||  |||||| |   | ||| | ||||||| || |||||||||||||||||| | |||||||||||    
T  18125672 acttgaaagtgtttgtttcagaagacttactagttgcacaatatctaagttgatgatgttttcttg 18125737  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 2 - 166
Target Start/End: Original strand, 18117920 - 18118084
Alignment:
Q  2 tttgcatcctactgtgccaactgttaccaaatctttcaactcaatccattttgaacgatcatcattccatatgtcatctaacacgagtaaaaacttttga 101  Q
    ||||| |||||||||||||||| | | ||||||||||||||| |||||||||  || ||||||||||||||| ||||||||||| ||||||||| ||| |    
T  18117920 tttgcttcctactgtgccaactttaatcaaatctttcaactcgatccattttacacaatcatcattccatatatcatctaacacaagtaaaaacctttta 18118019  T
Q  102 ccagaaagtttagatctcatacgacttacaagctgcacaatatctaagttgttaatgttttcttg 166  Q
    ||| ||||||||  ||||| |||||||   |||||| ||||||| || | ||| |||||||||||    
T  18118020 ccataaagtttacgtctcagacgactttgtagctgctcaatatcaaaatggtttatgttttcttg 18118084  T

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Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 26328852 - 26328679
Alignment:
Q  1 ttttgcatcctactgtgccaactgttaccaaatctttcaactcaatccattttgaacgatcatcattccatatgtcatctaacacgagtaaaaacttttg 100  Q
    |||||| | ||||||  |||||| ||| || ||||||||||||||||||||||||||| | ||||| |||||| |||||||| ||||||| ||||||||     
T  26328852 ttttgctttctactgcaccaacttttatcagatctttcaactcaatccattttgaacggttatcatcccatatatcatctaagacgagtacaaacttttt 26328753  T
Q  101 accagaaagtttagatctcatacgacttacaagctgcacaatatctaagttgttaatgttttcttgctgagaaa 174  Q
    ||| ||||| |||  ||| | |||||| || |  ||| ||||||| ||||  | |||||||||||| |||||||    
T  26328752 acctgaaagcttatgtctaagacgactcactaattgctcaatatcaaagtgttcaatgttttcttggtgagaaa 26328679  T

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