View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_226 (Length: 252)

Name: NF10104A_low_226
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_226
NF10104A_low_226
[»] chr6 (1 HSPs)
chr6 (6-252)||(24494668-24494914)
[»] scaffold0003 (2 HSPs)
scaffold0003 (6-148)||(86237-86379)
scaffold0003 (144-252)||(94018-94126)
[»] chr5 (1 HSPs)
chr5 (12-59)||(18557084-18557131)


Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 24494914 - 24494668
Alignment:
Q  6 actgatatgaagttcagagagaagtgatgacaaccagagaacttctgcagatgcggatgctagagctctatattcagcttcagtggatgatcttgcaacg 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24494914 actgacatgaagttcagagagaagtgatgacaaccagagaacttctgcagatgcggatgctagagctctatattcagcttcagtggatgatcttgcaacg 24494815  T
Q  106 gctttttgtttaaaagacttccaagaaattgggttaccaccataaaatgtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcgg 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24494814 gctttttgtttaaaagacttccaagaaattgggttaccaccataaaatgtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcgg 24494715  T
Q  206 catcactgaatgcataaagattttgagaagaagtgtgcttcaagtga 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  24494714 catcactgaatgcataaagattttgagaagaagtgtgcttcaagtga 24494668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 6 - 148
Target Start/End: Complemental strand, 86379 - 86237
Alignment:
Q  6 actgatatgaagttcagagagaagtgatgacaaccagagaacttctgcagatgcggatgctagagctctatattcagcttcagtggatgatcttgcaacg 105  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||     
T  86379 actgacatgaagttcagagagaagtgatgacaaccagagaacttctgcggatgcgtatgctagagctctgtattcagcttcagtggatgatcttgcaaca 86280  T
Q  106 gctttttgtttaaaagacttccaagaaattgggttaccaccat 148  Q
      |||||||||||||||||||||||||||||||||||||||||    
T  86279 aatttttgtttaaaagacttccaagaaattgggttaccaccat 86237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 144 - 252
Target Start/End: Complemental strand, 94126 - 94018
Alignment:
Q  144 accataaaatgtaacatgtgcagaggtggatgtataatcatctctatttccagcccaatcggcatcactgaatgcataaagattttgagaagaagtgtgc 243  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||  |    
T  94126 accataaaatgtaacatgtgcagaggtggatgtataatcatctcgatttccagcccaatcggcatcactgaatgcatatagattttgagaagaagtgcac 94027  T
Q  244 ttcaagtga 252  Q
    |||||||||    
T  94026 ttcaagtga 94018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 18557084 - 18557131
Alignment:
Q  12 atgaagttcagagagaagtgatgacaaccagagaacttctgcagatgc 59  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||    
T  18557084 atgaagttcagagagaagtgatgacaaccagagaacttctgcggatgc 18557131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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