View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10104A_low_23 (Length: 442)
Name: NF10104A_low_23
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 6 - 430
Target Start/End: Original strand, 549729 - 550151
Alignment:
| Q |
6 |
agaaccaagagttggaatgaggaaagtgacatggaaattgttgtgatgaagaacaagtagttttgcaaactctacaaatgggattaagtggcttagtcct |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
549729 |
agaaccaagagttggaatgaggaaagtgacatggaaattgttgtgatgaagaacaagtagttttgcaaactctacaaatgggattaagtggcttagtcct |
549828 |
T |
|
| Q |
106 |
ggacaaaaggaatcatggctatgcatgttttttgctccatagtgatgaatttaattcaatttaggaagctcaaggtttttgtggagatgcattaataaat |
205 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
549829 |
ggacaa--ggaatcatggctatgcatgttttttgctccatagtgatgaatttaattcaatttaggaagctctaggtttttgtggagatgcattaataaat |
549926 |
T |
|
| Q |
206 |
gtacaatccacctaagtatacataccagccagaaaagtaagttcaattactatgaacataattgacgagaaggtagccatgcacgtgaatttctgactag |
305 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
549927 |
gtacaatccacctaagtatacacaccagccagcaaagtaagttcaattactatgaacataattgacgagaaggtagccatgcacgtgaatttctgactag |
550026 |
T |
|
| Q |
306 |
tagagagaatggaaattacgattttcggtttgcaacatttatcatataccaaggtccacttgttataaataggaggtagatgagaaacccaaactcagaa |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
550027 |
tagagagaatggaaattacgattttcggtttgcaacatttatcatataccaaggtccacttgttataaataggaggtagatgagaaacccaaactcagaa |
550126 |
T |
|
| Q |
406 |
attacatacaattattagtcatatt |
430 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
550127 |
attacatacaattattagtcatatt |
550151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 6 - 226
Target Start/End: Complemental strand, 23422899 - 23422677
Alignment:
| Q |
6 |
agaaccaagagttggaatgaggaaagtgacatggaaattgttgtgatgaagaacaagtagttttgcaaactctacaaatgggattaagtggcttagtcct |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
23422899 |
agaaccaagagttggaatgaggaaagtgacatggaaattgttgtgatgaagaacaagtagttttgcaaactctacaaatggaattaagtggcttagtcct |
23422800 |
T |
|
| Q |
106 |
ggacaaaaggaatcatggctatgcatgttttttg---ctccatagtgatgaatttaattcaatttaggaagctcaaggtttttgtggagatgcattaat- |
201 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23422799 |
ggac--aaggaatcatggctatgcatgttttttgctcctccatagtgatgaatttaattcaatttaggaagctcaaggtttttgtggagatgcattaata |
23422702 |
T |
|
| Q |
202 |
aaatgtacaatccacctaagtatac |
226 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
23422701 |
aaatgtacaatccacctaattatac |
23422677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 263 - 402
Target Start/End: Complemental strand, 23422666 - 23422523
Alignment:
| Q |
263 |
ataattgacgagaaggtagcc-atgcacgtgaatttctgactagtagagagaatggaaattacgattttcggtttgcaacatttatcatataccaaggtc |
361 |
Q |
| |
|
||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
23422666 |
ataattgacgacaaggtagcctatgctcgtgaatttctgactagtagagagaatggaaattacgattttcggtttgcaacaattatcatataccaaggtc |
23422567 |
T |
|
| Q |
362 |
cacttgttataaatag---gaggtagatgagaaacccaaactca |
402 |
Q |
| |
|
|||||||||||||||| |||||||||||| || ||||||||| |
|
|
| T |
23422566 |
cacttgttataaataggaggaggtagatgagcaaaccaaactca |
23422523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University