View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_232 (Length: 250)
Name: NF10104A_low_232
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_232 |
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| [»] chr3 (3 HSPs) |
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| [»] scaffold0771 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 20900238 - 20900484
Alignment:
| Q |
9 |
gaaaagaaggtatgcctgtcagtggcagtacttaagttttaaagccatgtcattacctattacaaaagctttgatttctatttttatttctaacacgttc |
108 |
Q |
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|||||||||||||| |||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |
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| T |
20900238 |
gaaaagaaggtatgactgttagcggcagtactgaagttttaaagccatgtcattacctattacaaaagctttgatacctgtttttatttctaacacgttc |
20900337 |
T |
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| Q |
109 |
ttctaatattt-----caaatttctttgaatatcattgaatgttgatggtaggtaatttgtggcgcgaattgtgggaaacatctaagccagtacctgctg |
203 |
Q |
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| T |
20900338 |
ttctaatatttaaactcaaatttctttgaatatcattgaatgttgatggtaggtaatttgtggcgcgaattgtgggaaacatctaagccagtacctgctg |
20900437 |
T |
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| Q |
204 |
tgaaacaagcagctctctttgatgaggatttggcagtgtaagtctat |
250 |
Q |
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| T |
20900438 |
tgaaacaagcacctctctttgatgaggatttgacagtgtaagtctat |
20900484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 189
Target Start/End: Original strand, 13950006 - 13950191
Alignment:
| Q |
9 |
gaaaagaaggtatgcctgtcagtggcagtacttaagttttaaagccatgtcattacctattacaaaagctttgatttctatttttatttctaacacgttc |
108 |
Q |
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||||||||||||||| ||||| ||||||||| ||| | | ||||||||||| ||| ||||||||||||||||| ||| |||||||||||| ||||||| |
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| T |
13950006 |
gaaaagaaggtatgcttgtcaatggcagtaccaaaggtctgcagccatgtcatgaccaattacaaaagctttgatatctgtttttatttctaccacgttc |
13950105 |
T |
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| Q |
109 |
ttctaatattt-----caaatttctttgaatatcattgaatgttgatggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
189 |
Q |
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| T |
13950106 |
ttctaatatttaaactcaaatttctttgaatatcattgaatgttgatggtaggtaatttgtgacgcgaattgtgggaaacatctaa |
13950191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 189
Target Start/End: Original strand, 13950199 - 13950238
Alignment:
| Q |
150 |
tggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
189 |
Q |
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| T |
13950199 |
tggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
13950238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 189
Target Start/End: Original strand, 2146 - 2331
Alignment:
| Q |
9 |
gaaaagaaggtatgcctgtcagtggcagtacttaagttttaaagccatgtcattacctattacaaaagctttgatttctatttttatttctaacacgttc |
108 |
Q |
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||||||||||||||| ||||| ||||||||| ||| | | ||||||||||| ||| ||||||||||||||||| ||| |||||||||||| ||||||| |
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| T |
2146 |
gaaaagaaggtatgcttgtcaatggcagtaccaaaggtctgcagccatgtcatgaccaattacaaaagctttgatatctgtttttatttctaccacgttc |
2245 |
T |
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| Q |
109 |
ttctaatattt-----caaatttctttgaatatcattgaatgttgatggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
189 |
Q |
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| T |
2246 |
ttctaatatttaaactcaaatttctttgaatatcattgaatgttgatggtaggtaatttgtgacgcgaattgtgggaaacatctaa |
2331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 189
Target Start/End: Original strand, 2339 - 2378
Alignment:
| Q |
150 |
tggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
189 |
Q |
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| T |
2339 |
tggtaggtaatttgtggcgcgaattgtgggaaacatctaa |
2378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 147 - 246
Target Start/End: Original strand, 40702180 - 40702279
Alignment:
| Q |
147 |
tgatggtaggtaatttgtggcgcgaattgtgggaaacatctaagccagtacctgctgtgaaacaagcagctctctttgatgaggatttggcagtgtaagt |
246 |
Q |
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| T |
40702180 |
tgatgataggtaatttatggcatgaattgtgggcaacatctaaaccagtaccagctgttaagcaggcacctcttttcgatgaggatttggcagtgtaagt |
40702279 |
T |
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