View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_233 (Length: 250)

Name: NF10104A_low_233
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_233
NF10104A_low_233
[»] chr1 (2 HSPs)
chr1 (25-102)||(16146488-16146565)
chr1 (178-249)||(16146580-16146651)
[»] chr2 (1 HSPs)
chr2 (43-102)||(40119334-40119393)


Alignment Details
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 16146488 - 16146565
Alignment:
Q  25 aatactctactacagcttcttcaccttctggacccctttgtccacctacaaacaaaagcttatctccaaaagtcttga 102  Q
    ||||| |||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||| || ||||||    
T  16146488 aatacactactacagcttcttccccttccggaccactttgtccacctacaaacaacagcttatctccacaaatcttga 16146565  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 249
Target Start/End: Original strand, 16146580 - 16146651
Alignment:
Q  178 ttcttgatcatgctatttaaacgttcaattgtgtacaaccaatcgttaagtacagcaagaagtggtgaacat 249  Q
    ||||||||||||||| |||||||||||||||  |||||| |||| |||| |||||||| |||||||| ||||    
T  16146580 ttcttgatcatgctagttaaacgttcaattgcttacaactaatcattaaatacagcaacaagtggtggacat 16146651  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 102
Target Start/End: Complemental strand, 40119393 - 40119334
Alignment:
Q  43 cttcaccttctggacccctttgtccacctacaaacaaaagcttatctccaaaagtcttga 102  Q
    ||||||||||||||||||||||||||||||| | |||||| ||||||||| ||| |||||    
T  40119393 cttcaccttctggacccctttgtccacctacgaccaaaagtttatctccacaagccttga 40119334  T

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