View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_235 (Length: 250)

Name: NF10104A_low_235
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_235
NF10104A_low_235
[»] chr5 (9 HSPs)
chr5 (16-239)||(26099226-26099449)
chr5 (25-74)||(25224814-25224863)
chr5 (25-74)||(25288970-25289019)
chr5 (130-218)||(25224928-25225016)
chr5 (130-218)||(25289084-25289172)
chr5 (130-218)||(25728232-25728320)
chr5 (25-74)||(25728385-25728434)
chr5 (139-212)||(25222582-25222655)
chr5 (139-212)||(25286738-25286811)
[»] chr1 (1 HSPs)
chr1 (130-218)||(25618044-25618132)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 26099449 - 26099226
Alignment:
Q  16 ggagcctcagtcaagattccgaagatacattctaaagtttactacttcccacaaggtcacttaaaacatgtctcaactcacacaatcatcacccttcttc 115  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  26099449 ggagcctcagtcaagattccgaagctacattctaaagtttactacttcccacaaggtcacttaaaacatgtctcccctcacacaatcatcacccttcttc 26099350  T
Q  116 attgttatcctccttccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||    
T  26099349 attgttatcctccttccatttcctgcatcatctcagccgttgatctccttgttgatcctcacacagatgaagtctttgccaaactgctcctcactcccgt 26099250  T
Q  216 aacggaaggccatggccatgaaca 239  Q
    || ||| ||||||||||| |||||    
T  26099249 aatggatggccatggccacgaaca 26099226  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 25224814 - 25224863
Alignment:
Q  25 gtcaagattccgaagatacattctaaagtttactacttcccacaaggtca 74  Q
    ||||||||||||||||| || |||||||||||||||||||||| ||||||    
T  25224814 gtcaagattccgaagattcactctaaagtttactacttcccacgaggtca 25224863  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 25288970 - 25289019
Alignment:
Q  25 gtcaagattccgaagatacattctaaagtttactacttcccacaaggtca 74  Q
    ||||||||||||||||| || |||||||||||||||||||||| ||||||    
T  25288970 gtcaagattccgaagattcactctaaagtttactacttcccacgaggtca 25289019  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 25224928 - 25225016
Alignment:
Q  130 tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac 218  Q
    |||||| | |||||| ||||  ||||||||||| |||||||||||||| | || || || ||||||||||| ||||| |||||||||||    
T  25224928 tccattccatgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac 25225016  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 25289084 - 25289172
Alignment:
Q  130 tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac 218  Q
    |||||| | |||||| ||||  ||||||||||| |||||||||||||| | || || || ||||||||||| ||||| |||||||||||    
T  25289084 tccattccatgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac 25289172  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 218
Target Start/End: Complemental strand, 25728320 - 25728232
Alignment:
Q  130 tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac 218  Q
    |||||| | |||||| ||||  ||||||||||| |||||||||||||| | || || || ||||||||||| ||||| |||||||||||    
T  25728320 tccattccatgcatcgtctcttccgttgatctctttgttgatcctcacaccgacgaggtctttgccaaactgctcctgactcccgtaac 25728232  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 25728434 - 25728385
Alignment:
Q  25 gtcaagattccgaagatacattctaaagtttactacttcccacaaggtca 74  Q
    ||||||||||| ||||| || |||||||||||||||||||||| ||||||    
T  25728434 gtcaagattccaaagattcactctaaagtttactacttcccacgaggtca 25728385  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 25222655 - 25222582
Alignment:
Q  139 tgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcc 212  Q
    |||||||| ||||||||| ||||| |||||||| ||| | | || || ||||| |||||||| |||||||||||    
T  25222655 tgcatcatttcagccgttaatctctttgttgatgctctcactgacgaggttttcgccaaactgctcctcactcc 25222582  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 212
Target Start/End: Complemental strand, 25286811 - 25286738
Alignment:
Q  139 tgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcc 212  Q
    |||||||| ||||||||| ||||| |||||||| ||| | | || || ||||| |||||||| |||||||||||    
T  25286811 tgcatcatttcagccgttaatctctttgttgatgctctcactgacgaggttttcgccaaactgctcctcactcc 25286738  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 130 - 218
Target Start/End: Original strand, 25618044 - 25618132
Alignment:
Q  130 tccatttcctgcatcatctcagccgttgatctccttgttgatcctcacgcagatgaagtttttgccaaactcctcctcactcccgtaac 218  Q
    |||||| | |||||||||||  |||| |||||||||| ||||||| || | |||||||| || |||||||| |||||||||||||||||    
T  25618044 tccattccgtgcatcatctccaccgtcgatctccttgctgatccttacactgatgaagtcttcgccaaactgctcctcactcccgtaac 25618132  T

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