View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_236 (Length: 250)
Name: NF10104A_low_236
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_236 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 41983800 - 41983569
Alignment:
| Q |
19 |
tcattttgtaccaaacaaaaaacttgattatacaagtatgcaaatttttaagttaaacacatacctcacgagggctcaatttaattagataagcataact |
118 |
Q |
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| T |
41983800 |
tcattttgtaccaaacaaaaaacttgattatacaagtatgcaaatttttaagttaaacacatacctcacgagggctcaatttaattagataagcataact |
41983701 |
T |
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| Q |
119 |
tatcgtggtactaaaaagatatttcaccaacagtgtagtttgtcccaacatttgaaaaatattaatttcagaaacattaatctggccaaaatatattgtt |
218 |
Q |
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| T |
41983700 |
tatcgtggtactaaaaagatatttccccaacagtgtagtttgtcccaacatttgaaaaatattaatttcagaaacattaatctggccaaaatatattgtt |
41983601 |
T |
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| Q |
219 |
gatgtaattattaggaatcttaaatagtcata |
250 |
Q |
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| T |
41983600 |
gatgtaattattaggaatcttaaatagtcata |
41983569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 187
Target Start/End: Complemental strand, 9455740 - 9455663
Alignment:
| Q |
110 |
agcataacttatcgtggtactaaaaagatatttcaccaacagtgtagtttgtcccaacatttgaaaaatattaatttc |
187 |
Q |
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| T |
9455740 |
agcataatttatcatggtactaagaagatgcttctccaacaatgtaatttgtcccaacatttgaaaaatattattttc |
9455663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 44680504 - 44680746
Alignment:
| Q |
18 |
atcattttgtaccaaacaaaaaacttgattatacaagtatgcaaatttttaagttaaacacatacctc--acgagggctcaatttaattagataagcata |
115 |
Q |
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| T |
44680504 |
atcattttgtaccaaacaaaaaacttgattatacaagtatgcttatttttgagttagacacataactctcaccagggctcaatttaatcaggtaaactta |
44680603 |
T |
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| Q |
116 |
acttatcgtggtactaaaaagatatttcaccaacagtgtagtttgtcccaacatttgaaaaatattaatttc------------agaaacattaatctgg |
203 |
Q |
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| T |
44680604 |
acttatcatggtactaaaaagatgtttccccgacagtgtaatttgtcccaacatttgaaaaatattaatttcttctatccttgatgaaacatcaatgcgg |
44680703 |
T |
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| Q |
204 |
ccaaaatatattgttgatgtaattattaggaatcttaaatagt |
246 |
Q |
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| T |
44680704 |
ccaaaatatagtgttgaggtaattattaggaatattaaatagt |
44680746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 44689768 - 44690011
Alignment:
| Q |
19 |
tcattttgtaccaaacaaaaaacttgattatacaagtatgcaaattttta--agttaaacacatacctc--acgagggctcaatttaattagataagcat |
114 |
Q |
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| T |
44689768 |
tcattttgtaccaaacaaaaaagatgattatacaagtatgctaatttttttgagttagacatatacctctcacaagggatcagtttaatcaggtaaactt |
44689867 |
T |
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| Q |
115 |
aacttatcgtggtactaaaaagatatttcaccaacagtgtagtttgtcccaacatttgaaaaatattaatttc------------agaaacattaatctg |
202 |
Q |
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| T |
44689868 |
aacttatcatggtactaaaaagatgtttccccgacagtgtaatttgtcccaacatttgaaaaatattaatttcttctatccctgatgaaacatcaatccg |
44689967 |
T |
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| Q |
203 |
gccaaaatatattgttgatgtaattattaggaatcttaaatagt |
246 |
Q |
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| T |
44689968 |
gccaaaatatattgttgaggtaattattagaaatattaaatagt |
44690011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 187
Target Start/End: Complemental strand, 233886 - 233747
Alignment:
| Q |
48 |
atacaagtatgcaaatttttaagttaaacacatacctcacgagggctcaatttaattagataagcataacttatcgtggtactaaaaagatatttcacca |
147 |
Q |
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||||||||| || | ||| | ||||| || |||| |||| ||| ||||| ||||||| ||||||||||||||||| || |||||| ||||| ||| ||| |
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| T |
233886 |
atacaagtaggctagtttctgagttacactcataactcatgagagctcagtttaattggataagcataacttatcttgctactaagaagatgcttcccca |
233787 |
T |
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| Q |
148 |
acagtgtagtttgtcccaacatttgaaaaatattaatttc |
187 |
Q |
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| T |
233786 |
acaatttaatttaccctaacattttaaaaatattaatttc |
233747 |
T |
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