View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_237 (Length: 250)
Name: NF10104A_low_237
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_237 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 31700739 - 31700972
Alignment:
| Q |
9 |
gatatgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaag |
108 |
Q |
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| T |
31700739 |
gatatgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaag |
31700838 |
T |
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| Q |
109 |
tggtacttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtga |
208 |
Q |
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| T |
31700839 |
tggtacttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactattgtga |
31700938 |
T |
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| Q |
209 |
ccactatggtctat-tggagtcaatggatactgc |
241 |
Q |
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|||||||||||||| ||||||||||||||||||| |
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| T |
31700939 |
ccactatggtctatgtggagtcaatggatactgc |
31700972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 46 - 237
Target Start/End: Original strand, 31723329 - 31723521
Alignment:
| Q |
46 |
tctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggtacttaaccaaaccagttatgaacgtccacgcta |
145 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||| | || |||||||| || |
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| T |
31723329 |
tctgcaataaagaagaggtttattacacatggaacatcaaagatagtactcaaatatcaaaagtggtacttaaccaaaccagtaacgatcgtccacgata |
31723428 |
T |
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| Q |
146 |
catatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtgaccactatggtctat-tggagtcaatggata |
237 |
Q |
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| T |
31723429 |
cgtatggtcaaaggacgacaaatcatggaatatttattcaagaataccaggagacgattgtgaccattatggtcgatgtggagtcaatggata |
31723521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 31716051 - 31716276
Alignment:
| Q |
13 |
tgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggt |
112 |
Q |
| |
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||||||||||| | ||| || |||||| || |||| |||||||||||||||||||||||||||||||||||||||||||| | | |||||||| |||| |
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| T |
31716051 |
tgaagcctaatgatattttcagttacaattttgtctggaataaagaagaggtttattacacatggaacatcaaagatagttctcaagtatcaaaaatggt |
31716150 |
T |
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| Q |
113 |
acttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtgaccac |
212 |
Q |
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|||||||||||||||| | || |||||||||||| ||||||||||||||| ||||| ||||| | ||||||||| |||||| | |||| | ||||||| |
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| T |
31716151 |
acttaaccaaaccagtaaagatcgtccacgctacgtatggtcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccat |
31716250 |
T |
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| Q |
213 |
tatggtctat-tggagtcaatggata |
237 |
Q |
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||||||| || ||||||||||||||| |
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| T |
31716251 |
tatggtcaatgtggagtcaatggata |
31716276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 31721925 - 31722150
Alignment:
| Q |
13 |
tgaagcctaataacgtttacaattacaacttcatctgcaataaagaagaggtttattacacatggaacatcaaagatagttcactaatatcaaaagtggt |
112 |
Q |
| |
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||||||||||| | ||| || |||||| || |||| |||||||||||||||||||||||||||||||||||||||||||| | | |||||||| |||| |
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| T |
31721925 |
tgaagcctaatgatattttcagttacaattttgtctggaataaagaagaggtttattacacatggaacatcaaagatagttctcaagtatcaaaaatggt |
31722024 |
T |
|
| Q |
113 |
acttaaccaaaccagttatgaacgtccacgctacatatggtcaaaagacgacgaattatggatgctttattcaaaaataccagcagactatagtgaccac |
212 |
Q |
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|||||||||||||||| | || |||||||||||| ||||||||||||||| ||||| ||||| | ||||||||| |||||| | |||| | ||||||| |
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| T |
31722025 |
acttaaccaaaccagtaaagatcgtccacgctacgtatggtcaaaagacgtcgaatcatggagggtttattcaagaatacctggagacatttgtgaccat |
31722124 |
T |
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| Q |
213 |
tatggtctat-tggagtcaatggata |
237 |
Q |
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||||||| || ||||||||||||||| |
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| T |
31722125 |
tatggtcaatgtggagtcaatggata |
31722150 |
T |
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