View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_245 (Length: 248)

Name: NF10104A_low_245
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_245
NF10104A_low_245
[»] chr4 (4 HSPs)
chr4 (73-114)||(45088872-45088913)
chr4 (4-54)||(44668633-44668683)
chr4 (4-54)||(44687909-44687959)
chr4 (4-33)||(45095432-45095461)
[»] chr1 (4 HSPs)
chr1 (4-37)||(43986172-43986205)
chr1 (4-35)||(43983365-43983396)
chr1 (4-51)||(44004750-44004797)
chr1 (4-42)||(19567332-19567370)
[»] chr8 (1 HSPs)
chr8 (215-248)||(42694632-42694665)
[»] chr7 (1 HSPs)
chr7 (4-37)||(41688793-41688826)
[»] chr2 (1 HSPs)
chr2 (5-50)||(24002368-24002413)


Alignment Details
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 114
Target Start/End: Complemental strand, 45088913 - 45088872
Alignment:
Q  73 gatgccttgttcatttcagaaaacggtgtccttctgctgaga 114  Q
    ||||||||||||||||| ||||||||||| ||||||||||||    
T  45088913 gatgccttgttcatttctgaaaacggtgttcttctgctgaga 45088872  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 44668683 - 44668633
Alignment:
Q  4 gagtatggagttgttgagtcatggactaaattgacaatcttccctcaggat 54  Q
    |||||||||||||||||||||||||||||| |||  ||| |||| ||||||    
T  44668683 gagtatggagttgttgagtcatggactaaactgatgatcatcccacaggat 44668633  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 44687959 - 44687909
Alignment:
Q  4 gagtatggagttgttgagtcatggactaaattgacaatcttccctcaggat 54  Q
    |||||||||||||||||||||||||||||| |||  ||| |||| ||||||    
T  44687959 gagtatggagttgttgagtcatggactaaactgatgatcatcccacaggat 44687909  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 33
Target Start/End: Complemental strand, 45095461 - 45095432
Alignment:
Q  4 gagtatggagttgttgagtcatggactaaa 33  Q
    ||||||||||||||||||||||||||||||    
T  45095461 gagtatggagttgttgagtcatggactaaa 45095432  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 43986205 - 43986172
Alignment:
Q  4 gagtatggagttgttgagtcatggactaaattga 37  Q
    ||||||||||||||||||||||||||||||||||    
T  43986205 gagtatggagttgttgagtcatggactaaattga 43986172  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 35
Target Start/End: Complemental strand, 43983396 - 43983365
Alignment:
Q  4 gagtatggagttgttgagtcatggactaaatt 35  Q
    ||||||||||||||||||||||||||||||||    
T  43983396 gagtatggagttgttgagtcatggactaaatt 43983365  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 44004797 - 44004750
Alignment:
Q  4 gagtatggagttgttgagtcatggactaaattgacaatcttccctcag 51  Q
    ||||||||||||| ||||||||||||||||||||  ||| ||||||||    
T  44004797 gagtatggagttgctgagtcatggactaaattgatgatcatccctcag 44004750  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 19567370 - 19567332
Alignment:
Q  4 gagtatggagttgttgagtcatggactaaattgacaatc 42  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  19567370 gagtatggagttgctgagtcatggactatattgacaatc 19567332  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 42694632 - 42694665
Alignment:
Q  215 tttaccatgagagtctggtatcgccgcaatggta 248  Q
    |||||||||||||||||||||| |||||||||||    
T  42694632 tttaccatgagagtctggtatcaccgcaatggta 42694665  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 41688826 - 41688793
Alignment:
Q  4 gagtatggagttgttgagtcatggactaaattga 37  Q
    |||||| |||||||||||||||||||||||||||    
T  41688826 gagtatagagttgttgagtcatggactaaattga 41688793  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 24002368 - 24002413
Alignment:
Q  5 agtatggagttgttgagtcatggactaaattgacaatcttccctca 50  Q
    |||| |||||||||||||||||||| ||||||| |||| |||||||    
T  24002368 agtacggagttgttgagtcatggacaaaattgaaaatcatccctca 24002413  T

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