View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_248 (Length: 248)

Name: NF10104A_low_248
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_248
NF10104A_low_248
[»] chr3 (2 HSPs)
chr3 (13-247)||(38420168-38420403)
chr3 (171-204)||(49865316-49865349)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 247
Target Start/End: Complemental strand, 38420403 - 38420168
Alignment:
Q  13 attataattaagggtcatgaaagtcattttacaacaatctcaatggaatttgaaccatattgttaaaattataagattaagtttttattaatgaaccaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||  |||||||||||||||||||||||||||||||||||| |||    
T  38420403 attataattaagggtcatgaaagtcattttacaacaatctcaaagtaatttgaaccat--tgttaaaattataagattaagtttttattaatgaactaat 38420306  T
Q  113 acctcaagtttttccacatttctaatctgtactcgaatcatgaaatctaaagcact--agtgttgaaaggtg--tttttaatgtgtttttacacttatat 208  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||  |||  | ||||||||||||  ||||||||||||||||||||||||||    
T  38420305 acctcaagtttttccacgtttctaatctgtactcgaatcatgaaatctaaaatactacaatgttgaaaggtgtttttttaatgtgtttttacacttatat 38420206  T
Q  209 aagattatataatgtaaaatggtgtatcatgcaccaaaa 247  Q
     |||||||||||| ||||||||| |||||||||||||||    
T  38420205 -agattatataatctaaaatggtttatcatgcaccaaaa 38420168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 49865349 - 49865316
Alignment:
Q  171 tgttgaaaggtgtttttaatgtgtttttacactt 204  Q
    ||||| ||||||||||||||||||||||||||||    
T  49865349 tgttgtaaggtgtttttaatgtgtttttacactt 49865316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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