View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_250 (Length: 248)

Name: NF10104A_low_250
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_250
NF10104A_low_250
[»] chr3 (1 HSPs)
chr3 (9-248)||(49420099-49420338)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 248
Target Start/End: Complemental strand, 49420338 - 49420099
Alignment:
Q  9 gaagaaaatcaaggaacccaacaaccttcacccatctctttaatttgaacaaacaaaaatcataaaccaaaattttgattttgtgttacaatgacataac 108  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||     
T  49420338 gaagaaaatcaaggaacccaacaatcttcacccatctctttaatttgaataaacaaaaatcataaaccaaaattttgattttgtgttacaatgacataat 49420239  T
Q  109 agtggtagatttatcatgtgaataacatgctgacatctttatttggatgagtttctccaatctagttttgattttttcaaagatcttaaacttgggtagt 208  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       
T  49420238 agtggtagatttatcatgtgaataacacgctgacatttttatttggatgagtttctccaatctagttttgattttttcaaagatcttaaacttgagtcac 49420139  T
Q  209 gattatgatcaagatgatgaactttgcaactgtaacattg 248  Q
    |||| ||||| |||||| ||||||||||| ||| ||||||    
T  49420138 gattttgatcgagatgaagaactttgcaaatgtcacattg 49420099  T

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