View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_253 (Length: 247)

Name: NF10104A_low_253
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_253
NF10104A_low_253
[»] chr4 (22 HSPs)
chr4 (161-247)||(16556470-16556555)
chr4 (161-247)||(51974766-51974851)
chr4 (158-247)||(45847914-45848002)
chr4 (161-247)||(11491210-11491295)
chr4 (161-247)||(40406951-40407037)
chr4 (173-247)||(43362171-43362244)
chr4 (146-247)||(46283141-46283241)
chr4 (173-239)||(2832074-2832139)
chr4 (166-247)||(35909024-35909105)
chr4 (161-247)||(45355709-45355793)
chr4 (161-247)||(45369450-45369534)
chr4 (174-247)||(23448992-23449063)
chr4 (161-247)||(36993060-36993145)
chr4 (147-212)||(29430550-29430615)
chr4 (161-212)||(26885391-26885442)
chr4 (161-212)||(41271969-41272020)
chr4 (161-212)||(44251318-44251369)
chr4 (161-244)||(50815729-50815811)
chr4 (161-212)||(56555601-56555652)
chr4 (161-247)||(38690685-38690770)
chr4 (161-247)||(42154585-42154670)
chr4 (173-212)||(6637724-6637764)
[»] chr1 (22 HSPs)
chr1 (173-247)||(8893879-8893952)
chr1 (161-247)||(24134615-24134700)
chr1 (161-247)||(14262712-14262797)
chr1 (163-244)||(3347696-3347776)
chr1 (161-247)||(49619991-49620076)
chr1 (161-247)||(50065029-50065114)
chr1 (146-247)||(34702289-34702389)
chr1 (161-212)||(10123044-10123095)
chr1 (173-243)||(12148576-12148645)
chr1 (161-247)||(19424065-19424150)
chr1 (173-211)||(35309778-35309816)
chr1 (161-247)||(43109229-43109314)
chr1 (161-247)||(48497204-48497289)
chr1 (146-247)||(7438640-7438740)
chr1 (146-211)||(49239823-49239888)
chr1 (146-209)||(31964592-31964655)
chr1 (176-247)||(35527342-35527411)
chr1 (164-243)||(52164365-52164443)
chr1 (161-243)||(25031488-25031569)
chr1 (161-243)||(29936672-29936753)
chr1 (173-212)||(8865179-8865219)
chr1 (161-209)||(29332340-29332388)
[»] chr8 (24 HSPs)
chr8 (146-247)||(38289211-38289311)
chr8 (161-247)||(41454818-41454903)
chr8 (173-247)||(41845432-41845505)
chr8 (161-247)||(1032589-1032674)
chr8 (161-247)||(4259878-4259963)
chr8 (175-244)||(36103927-36103995)
chr8 (146-247)||(38544901-38545000)
chr8 (161-247)||(43413877-43413962)
chr8 (162-243)||(5904366-5904446)
chr8 (146-247)||(38063996-38064096)
chr8 (146-247)||(39104626-39104725)
chr8 (161-212)||(3311493-3311544)
chr8 (40-75)||(6097291-6097326)
chr8 (146-217)||(8349459-8349530)
chr8 (177-208)||(36587657-36587688)
chr8 (173-219)||(42688102-42688149)
chr8 (162-212)||(19957313-19957363)
chr8 (181-247)||(45536737-45536802)
chr8 (146-247)||(19733045-19733145)
chr8 (146-247)||(22652702-22652802)
chr8 (23-51)||(6097169-6097197)
chr8 (161-201)||(11052575-11052615)
chr8 (173-212)||(30942601-30942641)
chr8 (174-245)||(31153505-31153576)
[»] chr2 (14 HSPs)
chr2 (164-247)||(3330195-3330277)
chr2 (164-247)||(42678318-42678400)
chr2 (164-247)||(17543084-17543166)
chr2 (173-247)||(6866527-6866600)
chr2 (161-247)||(33065248-33065333)
chr2 (161-247)||(34107514-34107598)
chr2 (146-212)||(37592198-37592264)
chr2 (161-240)||(18424143-18424221)
chr2 (173-212)||(43684331-43684370)
chr2 (161-247)||(41749966-41750050)
chr2 (162-219)||(33613597-33613654)
chr2 (164-212)||(17376448-17376496)
chr2 (173-217)||(29090463-29090507)
chr2 (164-212)||(35710165-35710213)
[»] chr7 (17 HSPs)
chr7 (161-247)||(4956083-4956168)
chr7 (161-247)||(31793487-31793572)
chr7 (161-247)||(40273840-40273925)
chr7 (161-247)||(48433701-48433786)
chr7 (173-247)||(36528222-36528295)
chr7 (146-247)||(12166101-12166201)
chr7 (146-247)||(38378238-38378338)
chr7 (160-247)||(24030004-24030090)
chr7 (164-247)||(46243310-46243392)
chr7 (161-247)||(43440708-43440793)
chr7 (164-247)||(3889794-3889877)
chr7 (146-212)||(10624774-10624839)
chr7 (173-247)||(33248805-33248878)
chr7 (173-247)||(42554653-42554726)
chr7 (146-212)||(42841757-42841823)
chr7 (161-222)||(48258175-48258236)
chr7 (164-208)||(15025213-15025257)
[»] chr6 (15 HSPs)
chr6 (161-247)||(6228251-6228336)
chr6 (161-247)||(17216977-17217062)
chr6 (161-247)||(18903358-18903443)
chr6 (161-247)||(20415553-20415638)
chr6 (146-247)||(29321952-29322052)
chr6 (161-247)||(24794886-24794971)
chr6 (147-217)||(7164742-7164812)
chr6 (161-247)||(7954913-7954998)
chr6 (161-219)||(9455885-9455943)
chr6 (175-247)||(4854311-4854382)
chr6 (161-245)||(31637365-31637448)
chr6 (161-244)||(25091090-25091172)
chr6 (146-212)||(5641666-5641732)
chr6 (173-247)||(19748118-19748190)
chr6 (187-219)||(35190809-35190841)
[»] chr5 (12 HSPs)
chr5 (161-247)||(17077380-17077465)
chr5 (161-247)||(31250166-31250251)
chr5 (161-247)||(38503248-38503333)
chr5 (161-247)||(43227885-43227970)
chr5 (146-247)||(15470597-15470697)
chr5 (161-245)||(33545378-33545460)
chr5 (178-247)||(15106895-15106963)
chr5 (146-247)||(34729491-34729590)
chr5 (161-243)||(4395842-4395923)
chr5 (146-247)||(930914-931014)
chr5 (147-212)||(1572163-1572228)
chr5 (187-219)||(2029145-2029177)
[»] chr3 (21 HSPs)
chr3 (161-247)||(47864655-47864740)
chr3 (146-247)||(27471523-27471623)
chr3 (146-247)||(32421367-32421467)
chr3 (146-247)||(39739293-39739393)
chr3 (161-247)||(50381733-50381818)
chr3 (146-243)||(44062018-44062113)
chr3 (175-246)||(46798602-46798672)
chr3 (146-247)||(1325307-1325408)
chr3 (146-212)||(29645803-29645869)
chr3 (146-247)||(31435477-31435577)
chr3 (164-247)||(29226345-29226427)
chr3 (161-247)||(33528196-33528281)
chr3 (146-212)||(50676843-50676909)
chr3 (162-247)||(11483632-11483716)
chr3 (147-212)||(48717466-48717531)
chr3 (161-212)||(49429513-49429564)
chr3 (161-247)||(27817059-27817143)
chr3 (146-200)||(38668193-38668247)
chr3 (197-241)||(8258177-8258220)
chr3 (180-247)||(25165459-25165526)
chr3 (161-209)||(27394563-27394611)
[»] scaffold0001 (1 HSPs)
scaffold0001 (161-247)||(419731-419816)
[»] scaffold0087 (1 HSPs)
scaffold0087 (161-212)||(44346-44397)


Alignment Details
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 16556555 - 16556470
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| ||||||||||||||||||||||||||  ||||| ||||| |||||||||||||||||||||    
T  16556555 ggctagagaaattcaccttaaagatgaataagtggggtgttcggggttcgaaccccgac-ccctgcacatattgtgcattatccctt 16556470  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 51974851 - 51974766
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| |||||||||||||||||||||||| ||| || ||||||||| ||||| ||||| |||||||||||||||||||||    
T  51974851 ggctagataaattcaccttaaagataaataagtgggatgtccgaggttcgaatcccgac-ccctgcacatattgtgcattatccctt 51974766  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 158 - 247
Target Start/End: Original strand, 45847914 - 45848002
Alignment:
Q  158 aggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    |||||||| | ||| ||||||||||||| |||||||||||||| |||||||||||  |||| |||||| ||||||| |||||||||||||    
T  45847914 aggggctaaagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccga-tccctgcacatattatgcattatccctt 45848002  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 11491210 - 11491295
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| |||||||||||||| ||||||||||| |||| | ||||| ||| ||| |||||||||||||    
T  11491210 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaactccggc-ccctgcacaaattatgcattatccctt 11491295  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 40406951 - 40407037
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| |||||||||||||| |||||||||||  ||    ||||| |||||||||||||||||||||    
T  40406951 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaacccccggcccctgcacatattgtgcattatccctt 40407037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 43362171 - 43362244
Alignment:
Q  173 tcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||||||||| |||||||||||||| |||||||||||  ||||| ||||| | |||||||||||||||||||    
T  43362171 tcaccttaaagatgaataagtggggtgtccggggttcgaaccccgac-ccctgaatatattgtgcattatccctt 43362244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 46283241 - 46283141
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccc 245  Q
    ||||||||||  || | ||||| ||| ||||||||||||| |||||||||||||| |||||||||||  ||| | | ||| |||||||||||||||||||    
T  46283241 gtcaagtagtctagtgactagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggc-cgctgcacatattgtgcattatccc 46283143  T
Q  246 tt 247  Q
    ||    
T  46283142 tt 46283141  T

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Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 239
Target Start/End: Original strand, 2832074 - 2832139
Alignment:
Q  173 tcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcat 239  Q
    ||||||||||||| ||||||||||||||| ||||||||||  ||||| ||||| |||||||||||||    
T  2832074 tcaccttaaagatgaataagtggggtgtttggggttcgaaccccgac-ccctgcacatattgtgcat 2832139  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 247
Target Start/End: Original strand, 35909024 - 35909105
Alignment:
Q  166 gaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaa-ttccgactccctgtacatattgtgcattatccctt 247  Q
    |||||| ||||||||||||||||||||||||||||  ||| ||||||  |||||| ||||| | |||||||||||||||||||    
T  35909024 gaaaaattcaccttaaagataaataagtggggtgtctgggattcgaacctccgac-ccctgcatatattgtgcattatccctt 35909105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 45355709 - 45355793
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| ||||||| |||||| |||||||||||  ||||| ||||  |||||||||||||||||||||    
T  45355709 ggctagagaaattcaccttaaagatgaataagt-gggtgtccggggttcgaaccccgac-ccctacacatattgtgcattatccctt 45355793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 45369450 - 45369534
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| ||||||| |||||| |||||||||||  ||||| ||||  |||||||||||||||||||||    
T  45369450 ggctagagaaattcaccttaaagatgaataagt-gggtgtccggggttcgaaccccgac-ccctacacatattgtgcattatccctt 45369534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 23449063 - 23448992
Alignment:
Q  174 caccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||||| || ||||||||||||||||||||||||||  || || ||||| |||||||||||||||||||||    
T  23449063 caccttaaa-atgaataagtggggtgttcggggttcgaaccccaac-ccctgcacatattgtgcattatccctt 23448992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 36993145 - 36993060
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| ||||| |||||||| |||||||| ||  || || ||||  |||||||||||||||||||||    
T  36993145 ggctagagaaattcaccttaaagatgaataattggggtgtccggggttcaaaccccaac-cccttcacatattgtgcattatccctt 36993060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 29430615 - 29430550
Alignment:
Q  147 tcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaa 212  Q
    |||||||||| |  ||||||| ||| ||||||||||||| ||||||| |||||| |||||||||||    
T  29430615 tcaagtagtttattggctagataaattcaccttaaagatgaataagtagggtgtccggggttcgaa 29430550  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 26885391 - 26885442
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaa 212  Q
    ||||||| |||  |||||||||||||||||||||| |||| |||||||||||    
T  26885391 ggctagagaaatccaccttaaagataaataagtggagtgtccggggttcgaa 26885442  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 41271969 - 41272020
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaa 212  Q
    ||||| ||||||||||||| ||||| |||||||||||||| ||| |||||||    
T  41271969 ggctaaaaaaaatcacctttaagatgaataagtggggtgtccggagttcgaa 41272020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 44251318 - 44251369
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaa 212  Q
    ||||||||||| ||||||||||||| ||||| |||||||| |||| ||||||    
T  44251318 ggctagaaaaattcaccttaaagatgaataaatggggtgtccgggattcgaa 44251369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 50815811 - 50815729
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatcc 244  Q
    ||||||| ||| ||||||| ||||| |||| ||||||||| |||||||||||  ||| | ||||| ||| ||||||||||||||    
T  50815811 ggctagagaaattcacctttaagatgaatatgtggggtgtccggggttcgaaccccggc-ccctgcacaaattgtgcattatcc 50815729  T

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Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 56555652 - 56555601
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaa 212  Q
    ||||||| ||| ||||||||||| | ||||||||||||||||| ||||||||    
T  56555652 ggctagagaaattcaccttaaaggtgaataagtggggtgttcgaggttcgaa 56555601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 38690770 - 38690685
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| |||||||||||   |||||||||||||| |||||||||||  ||||| ||||| | ||| | |||||||||||||    
T  38690770 ggctagagaaattcaccttaaaggagaataagtggggtgtccggggttcgaaccccgac-ccctgcatataatatgcattatccctt 38690685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 42154670 - 42154585
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| | ||||||  |||| |||||||||||  ||||| | ||| |||||||||| ||||||||||    
T  42154670 ggctagagaaattcaccttaaagatgattaagtgaagtgtccggggttcgaaccccgac-ctctgcacatattgtgaattatccctt 42154585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 6637724 - 6637764
Alignment:
Q  173 tcacctta-aagataaataagtggggtgttcggggttcgaa 212  Q
    |||||||| ||||| ||||||||||||||||||||||||||    
T  6637724 tcaccttataagatgaataagtggggtgttcggggttcgaa 6637764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 8893952 - 8893879
Alignment:
Q  173 tcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||||||||| ||||||||||||||| ||||||||||  ||||| |||||||||||||||||||||||||||    
T  8893952 tcaccttaaagatgaataagtggggtgtttggggttcgaaccccgac-ccctgtacatattgtgcattatccctt 8893879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 24134615 - 24134700
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| |||||||||||||| |||||||||||  ||| | ||||| |||||||||||||||||||||    
T  24134615 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggc-ccctgcacatattgtgcattatccctt 24134700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 14262712 - 14262797
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| ||||||| |||||| |||||||||||  ||||| ||||| | |||||||||||||||||||    
T  14262712 ggctagagaaattcaccttaaagatgaataagtagggtgtccggggttcgaaccccgac-ccctgcatatattgtgcattatccctt 14262797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 244
Target Start/End: Original strand, 3347696 - 3347776
Alignment:
Q  163 ctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatcc 244  Q
    ||||| ||| ||||||||||||| |||||||||||||| |||||||||||  |||||| |||| ||||||||| ||||||||    
T  3347696 ctagagaaattcaccttaaagatgaataagtggggtgtacggggttcgaaccccgact-cctgaacatattgtacattatcc 3347776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 49620076 - 49619991
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| |||| |||||||| |||||||||||||| ||||||  |||  ||||| ||||| |||||||||||||||||||||    
T  49620076 ggctagagaaattcactttaaagatgaataagtggggtgtccggggtctgaaccccgac-ccctgcacatattgtgcattatccctt 49619991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 50065114 - 50065029
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| |||||||||||||| || | ||||||  |||  |||||| |||||||||||||||||||||    
T  50065114 ggctagagaaattcaccttaaagatgaataagtggggtgtccgagattcgaaccccg-gtccctgcacatattgtgcattatccctt 50065029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 34702289 - 34702389
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccc 245  Q
    ||||||||||  || ||||| | ||| ||| ||||||||| |||||||| ||||| |||||||||||  ||| | ||||| |||||||||||||||||||    
T  34702289 gtcaagtagtctagtggctaaagaaattcatcttaaagatgaataagtgaggtgtccggggttcgaaccccggc-ccctgcacatattgtgcattatccc 34702387  T
Q  246 tt 247  Q
    ||    
T  34702388 tt 34702389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 10123044 - 10123095
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaa 212  Q
    ||||||| ||| ||||||||||||| ||||||||||||||| ||||||||||    
T  10123044 ggctagagaaattcaccttaaagatgaataagtggggtgtttggggttcgaa 10123095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 12148576 - 12148645
Alignment:
Q  173 tcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatc 243  Q
    ||||||||||||| ||||||||||||||  |||||| ||| |||||| ||||| ||||||||| |||||||    
T  12148576 tcaccttaaagatgaataagtggggtgtctggggtttgaactccgac-ccctgcacatattgtacattatc 12148645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 19424150 - 19424065
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||| | |||||||||||||| |||||||||||  ||||| ||||| | ||| | |||||||||||||    
T  19424150 ggctagagaaattcaccttaaaggtgaataagtggggtgtccggggttcgaaccccgac-ccctgcatataatatgcattatccctt 19424065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 35309816 - 35309778
Alignment:
Q  173 tcaccttaaagataaataagtggggtgttcggggttcga 211  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  35309816 tcaccttaaagatgaataagtggggtgttcggggttcga 35309778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 43109229 - 43109314
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| ||||| || ||||| |||||||||||  ||| | ||||| ||||||| |||||||||||||    
T  43109229 ggctagagaaattcaccttaaagatgaataaatgaggtgtccggggttcgaaccccggc-ccctgcacatattttgcattatccctt 43109314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 48497204 - 48497289
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| | ||||||||||| ||||| ||| |||| |||| |||||| |||| | ||||| |||||||||||||||||||||    
T  48497204 ggctagagaaatttaccttaaagatgaataaatggagtgtccgggattcgaactccggc-ccctgcacatattgtgcattatccctt 48497289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 7438740 - 7438640
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccc 245  Q
    ||||||||||  || ||||| | ||| ||||||| ||||| |||||||||||||| ||| |||||||  ||||| ||||  ||| |||||||||||||||    
T  7438740 gtcaagtagtctagtggctaaagaaattcacctttaagatgaataagtggggtgtccggagttcgaaccccgac-ccctacacaaattgtgcattatccc 7438642  T
Q  246 tt 247  Q
    ||    
T  7438641 tt 7438640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 49239823 - 49239888
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcga 211  Q
    ||||||||| | || ||||||| ||| | ||||||||||| |||||||||||||| ||||||||||    
T  49239823 gtcaagtagcttagtggctagagaaatttaccttaaagatgaataagtggggtgtccggggttcga 49239888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 31964592 - 31964655
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttc 209  Q
    ||||||||| | || ||||||||||| | || |||||||| |||||||| ||||||||||||||    
T  31964592 gtcaagtagcttagcggctagaaaaatttactttaaagatgaataagtgaggtgttcggggttc 31964655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 35527342 - 35527411
Alignment:
Q  176 ccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||| |||||||||||||| ||||| ||||||| || |||||| ||||  |||||||||||||||||||||    
T  35527342 ccttatagataaataagtggagtgtttggggttcaaactccgac-ccct-cacatattgtgcattatccctt 35527411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 52164365 - 52164443
Alignment:
Q  164 tagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatc 243  Q
    |||| ||| |||||||||| || |||||||||||||| |||  ||||||  |||| |||||| |||||||||||||||||    
T  52164365 tagagaaattcaccttaaaaattaataagtggggtgtccggaattcgaaccccga-tccctgcacatattgtgcattatc 52164443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 25031488 - 25031569
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatc 243  Q
    ||||||| ||| ||||||||||||| |||||||||||||| |||  ||||||  ||| | ||||| ||||||| |||||||||    
T  25031488 ggctagagaaattcaccttaaagatgaataagtggggtgtccggaattcgaaccccggc-ccctgcacatattatgcattatc 25031569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 29936672 - 29936753
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatc 243  Q
    ||||||| ||| |||| || ||||| |||||||||||||| ||| ||||||| |||||| ||||| ||| || ||||||||||    
T  29936672 ggctagagaaattcacttttaagatgaataagtggggtgtccggagttcgaactccgac-ccctgcacaaatcgtgcattatc 29936753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 8865179 - 8865219
Alignment:
Q  173 tcacctta-aagataaataagtggggtgttcggggttcgaa 212  Q
    |||||||| |||||||||||||||||||||| |||||||||    
T  8865179 tcaccttataagataaataagtggggtgttctgggttcgaa 8865219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 29332388 - 29332340
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttc 209  Q
    ||||||| ||| ||||||||||| | |||||||||||||| ||||||||    
T  29332388 ggctagagaaattcaccttaaaggtgaataagtggggtgtccggggttc 29332340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 38289211 - 38289311
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccc 245  Q
    ||||||||| | || ||||||| ||| ||||||||||||| ||||||||||||||| | ||||||||  ||||| ||||| |||||||||||||||||||    
T  38289211 gtcaagtagcttagtggctagagaaattcaccttaaagatgaataagtggggtgtttgaggttcgaaccccgac-ccctgcacatattgtgcattatccc 38289309  T
Q  246 tt 247  Q
    ||    
T  38289310 tt 38289311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 41454818 - 41454903
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| |||| |||||||| |||||||||||||| |||||||||||  ||| | ||||| |||||||||||||||||||||    
T  41454818 ggctagagaaattcacattaaagatgaataagtggggtgtccggggttcgaaccccggc-ccctgcacatattgtgcattatccctt 41454903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 41845432 - 41845505
Alignment:
Q  173 tcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||||||||| ||||| | ||||||||||||||||||  |||| |||||| |||||||||||||||||||||    
T  41845432 tcaccttaaagatgaataaatagggtgttcggggttcgaaccccga-tccctgcacatattgtgcattatccctt 41845505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 1032674 - 1032589
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| ||||||||||||||  ||||||||||  || |  ||||| |||||||||||||||||||||    
T  1032674 ggctagagaaattcaccttaaagatgaataagtggggtgtctggggttcgaa-ccccagcccctgcacatattgtgcattatccctt 1032589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 4259963 - 4259878
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| ||||||||||| || ||||||| |||  ||| | ||||| |||||||||||||||||||||    
T  4259963 ggctagagaaattcaccttaaagatgaataagtggggagtccggggttggaaccccggc-ccctgcacatattgtgcattatccctt 4259878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 244
Target Start/End: Original strand, 36103927 - 36103995
Alignment:
Q  175 accttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatcc 244  Q
    ||||||||||| ||||||||||||||| ||||||||||  ||| | ||||| ||||||||||||||||||    
T  36103927 accttaaagatgaataagtggggtgtttggggttcgaaccccggc-ccctgcacatattgtgcattatcc 36103995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 38544901 - 38545000
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccc 245  Q
    ||||||||||| || || |||| |||  |||||||||||||||||||| ||||||||||| ||||||  | || ||| || |||||||||||||||||||    
T  38544901 gtcaagtagtttagtggttagagaaatccaccttaaagataaataagt-gggtgttcgggattcgaaccctga-tccatgcacatattgtgcattatccc 38544998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 43413877 - 43413962
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| ||||||||||||||| ||| ||||||  || |  ||||| ||| |||||||||||||||||    
T  43413877 ggctagagaaattcaccttaaagatgaataagtggggtgtttgggattcgaa-ccccagcccctgcacaaattgtgcattatccctt 43413962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 5904366 - 5904446
Alignment:
Q  162 gctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatc 243  Q
    |||||| ||| ||| ||||||||| |||||||||| ||| |||||||||||  ||| | ||||| |||||||||||||||||    
T  5904366 gctagagaaattcatcttaaagatgaataagtgggatgtccggggttcgaaccccgtc-ccctgcacatattgtgcattatc 5904446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 38064096 - 38063996
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccc 245  Q
    ||||||||||  || || |||| ||| ||||||||||||| ||||||||||||||  ||||||| ||  || | |||||| ||| |||||||||||||||    
T  38064096 gtcaagtagtccagtggttagagaaattcaccttaaagatgaataagtggggtgtctggggttc-aacccccagtccctgcacaaattgtgcattatccc 38063998  T
Q  246 tt 247  Q
    ||    
T  38063997 tt 38063996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 39104725 - 39104626
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccc 245  Q
    ||||||||||  || ||||||| |||  |||||||||||| ||||||| |||||| |||||||||||  ||| | | ||| |||||||||||||||||||    
T  39104725 gtcaagtagtctagtggctagagaaatccaccttaaagatgaataagt-gggtgtccggggttcgaaccccggc-cgctgcacatattgtgcattatccc 39104628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 3311544 - 3311493
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaa 212  Q
    ||||||||||| ||| ||| ||||| |||||||||||||| |||||||||||    
T  3311544 ggctagaaaaattcatctttaagatgaataagtggggtgtccggggttcgaa 3311493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 6097291 - 6097326
Alignment:
Q  40 ccagatccataacttgaggggcttattagttacaaa 75  Q
    ||||||||||||||||| ||||||||||||||||||    
T  6097291 ccagatccataacttgaagggcttattagttacaaa 6097326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 8349459 - 8349530
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccg 217  Q
    ||||||||||  || || |||| ||| ||| ||||||||| |||||||||||||||||| ||||||| ||||    
T  8349459 gtcaagtagtctagtggttagataaattcatcttaaagatgaataagtggggtgttcggagttcgaactccg 8349530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 208
Target Start/End: Original strand, 36587657 - 36587688
Alignment:
Q  177 cttaaagataaataagtggggtgttcggggtt 208  Q
    ||||||||||||||||||||||||||||||||    
T  36587657 cttaaagataaataagtggggtgttcggggtt 36587688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 42688149 - 42688102
Alignment:
Q  173 tcacctta-aagataaataagtggggtgttcggggttcgaattccgac 219  Q
    |||||||| ||| ||||||||||||||||||||||||||||| |||||    
T  42688149 tcaccttataaggtaaataagtggggtgttcggggttcgaatcccgac 42688102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 212
Target Start/End: Original strand, 19957313 - 19957363
Alignment:
Q  162 gctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaa 212  Q
    |||||| ||| ||||||||||| | |||||||||||||| |||||||||||    
T  19957313 gctagagaaattcaccttaaaggtgaataagtggggtgtccggggttcgaa 19957363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 247
Target Start/End: Complemental strand, 45536802 - 45536737
Alignment:
Q  181 aagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||| |||||||||||||| ||||||||||| |||| | ||||| ||| ||| |||||||||||||    
T  45536802 aagatgaataagtggggtgtccggggttcgaactccggc-ccctgcacaaattttgcattatccctt 45536737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 19733045 - 19733145
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccc 245  Q
    ||||||||| | || || |||| ||| ||||||||||||| ||||| |  |||||||||| ||||||  ||||| ||||| | ||||| |||||||||||    
T  19733045 gtcaagtagcttagtggttagagaaattcaccttaaagatgaataatttaggtgttcgggattcgaaccccgac-ccctgcatatattatgcattatccc 19733143  T
Q  246 tt 247  Q
    ||    
T  19733144 tt 19733145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 22652802 - 22652702
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccc 245  Q
    ||||||||| | || ||||||| ||| ||||||| || || ||||| |||||||| |||||||||||  ||| | ||||| ||| ||| |||||||||||    
T  22652802 gtcaagtagcttagtggctagagaaattcacctttaacatgaataattggggtgtccggggttcgaacaccggc-ccctgcacaaattatgcattatccc 22652704  T
Q  246 tt 247  Q
    ||    
T  22652703 tt 22652702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 51
Target Start/End: Original strand, 6097169 - 6097197
Alignment:
Q  23 cagtaaatgcatcaaatccagatccataa 51  Q
    |||||||||||||||||||||||||||||    
T  6097169 cagtaaatgcatcaaatccagatccataa 6097197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 201
Target Start/End: Original strand, 11052575 - 11052615
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgtt 201  Q
    ||||||| ||| ||||||||||||| |||||||||||||||    
T  11052575 ggctagagaaattcaccttaaagatgaataagtggggtgtt 11052615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 212
Target Start/End: Original strand, 30942601 - 30942641
Alignment:
Q  173 tcacctta-aagataaataagtggggtgttcggggttcgaa 212  Q
    |||||||| ||| ||||||||||||||||||||||||||||    
T  30942601 tcaccttataaggtaaataagtggggtgttcggggttcgaa 30942641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 31153576 - 31153505
Alignment:
Q  174 caccttaaagataaataagtgggg-tgttcggggttcgaattccgactccctgtacatattgtgcattatccc 245  Q
    |||||||||||| ||||| ||||| ||| || ||||||||| ||| | ||||| |||||||||||||||||||    
T  31153576 caccttaaagatgaataaatgggggtgtccgaggttcgaatcccggc-ccctgcacatattgtgcattatccc 31153505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 247
Target Start/End: Original strand, 3330195 - 3330277
Alignment:
Q  164 tagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    |||| ||| ||||||||||||| |||||||||||||| ||||||||||| |||||| | ||| |||||||||||||||||||||    
T  3330195 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaactccgac-ctctgcacatattgtgcattatccctt 3330277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 247
Target Start/End: Original strand, 42678318 - 42678400
Alignment:
Q  164 tagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    |||| ||| ||||||||||||| |||||||||||||| ||||||||||| ||||| |||||   ||||||||||||||||||||    
T  42678318 tagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaactccga-tccctacgcatattgtgcattatccctt 42678400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 164 - 247
Target Start/End: Original strand, 17543084 - 17543166
Alignment:
Q  164 tagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    |||| ||| |||| |||||||| |||||||||||||| ||| ||||||| |||| | ||||| |||||||||||||||||||||    
T  17543084 tagagaaagtcacattaaagatgaataagtggggtgtccggcgttcgaactccggc-ccctgcacatattgtgcattatccctt 17543166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 6866600 - 6866527
Alignment:
Q  173 tcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    |||||||||||||||||||||| ||||| |||| |||||| ||||  | |||| |||||||||||||||||||||    
T  6866600 tcaccttaaagataaataagtgaggtgtccgggattcgaactccg-gttcctgcacatattgtgcattatccctt 6866527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 33065248 - 33065333
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| ||||||| |||||||||| |||||||  ||||| ||||  ||| |||||||||||||||||    
T  33065248 ggctagagaaattcaccttaaagatgaataagtagggtgttcggagttcgaaccccgac-ccctacacacattgtgcattatccctt 33065333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 34107598 - 34107514
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| |||||||||||||| |||| || |||  | ||| ||||| |||||||||||||||||||||    
T  34107598 ggctagagaaattcaccttaaagatgaataagtggggtgtccgggttt-gaaccctgac-ccctgcacatattgtgcattatccctt 34107514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 37592198 - 37592264
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaa 212  Q
    ||||||||||  || ||||||| ||| ||||||||||| ||||||||||||||||  ||||||||||    
T  37592198 gtcaagtagtctagcggctagagaaattcaccttaaaggtaaataagtggggtgtctggggttcgaa 37592264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 18424143 - 18424221
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcatt 240  Q
    ||||||| ||| ||||||||||||| |||||||||| ||| ||| |||||||  ||| | ||||| ||||||||||||||    
T  18424143 ggctagagaaattcaccttaaagatgaataagtgggatgtccggagttcgaaccccggc-ccctgcacatattgtgcatt 18424221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 212
Target Start/End: Complemental strand, 43684370 - 43684331
Alignment:
Q  173 tcaccttaaagataaataagtggggtgttcggggttcgaa 212  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  43684370 tcaccttaaaggtgaataagtggggtgttcggggttcgaa 43684331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 41750050 - 41749966
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| ||||||| |||||| |||||||| ||  ||||| ||||  ||| |||||||||||||||||    
T  41750050 ggctagagaaattcaccttaaagatgaataagt-gggtgtccggggttcaaaccccgac-ccctacacacattgtgcattatccctt 41749966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 219
Target Start/End: Original strand, 33613597 - 33613654
Alignment:
Q  162 gctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgac 219  Q
    |||||| ||| ||| ||||||| | |||||||||||||| ||||||||||| ||||||    
T  33613597 gctagagaaattcaacttaaaggtgaataagtggggtgtccggggttcgaactccgac 33613654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 17376448 - 17376496
Alignment:
Q  164 tagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaa 212  Q
    |||| ||| |||||||||| |||||||| | ||||||||||||||||||    
T  17376448 tagagaaattcaccttaaaaataaataaatagggtgttcggggttcgaa 17376496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Complemental strand, 29090507 - 29090463
Alignment:
Q  173 tcaccttaaagataaataagtggggtgttcggggttcgaattccg 217  Q
    ||||||||||||| |||||||| ||||| ||||||||||| ||||    
T  29090507 tcaccttaaagatgaataagtgaggtgtccggggttcgaactccg 29090463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 35710165 - 35710213
Alignment:
Q  164 tagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaa 212  Q
    |||| ||| ||||||||||||| |||||||||| |||| ||||||||||    
T  35710165 tagagaaattcaccttaaagatgaataagtgggatgtttggggttcgaa 35710213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 4956083 - 4956168
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| |||||||||||||| | |||||||||  ||||| ||||| |||||||||||||||||||||    
T  4956083 ggctagagaaattcaccttaaagatgaataagtggggtgtccagggttcgaaccccgac-ccctgcacatattgtgcattatccctt 4956168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 31793572 - 31793487
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| |||  |||||||||||| |||||||||||||| |||||||||||  ||||| ||||| |||||||||||||||||||||    
T  31793572 ggctagagaaatccaccttaaagatgaataagtggggtgtccggggttcgaaccccgac-ccctgcacatattgtgcattatccctt 31793487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 40273925 - 40273840
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| |||||||||||||| |||||||||||  ||| | ||||| |||||||||||||||||||||    
T  40273925 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggc-ccctgcacatattgtgcattatccctt 40273840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 48433701 - 48433786
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| |||||||||||||| ||||||| |||  ||| | ||||| |||||||||||||||||||||    
T  48433701 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggtttgaaccccggc-ccctgcacatattgtgcattatccctt 48433786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 36528222 - 36528295
Alignment:
Q  173 tcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    |||||||||| || |||| ||||| ||| ||||||||||| |||||| |||| ||||||||||||||||||||||    
T  36528222 tcaccttaaaaatgaataggtgggatgtccggggttcgaactccgac-ccctatacatattgtgcattatccctt 36528295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 12166201 - 12166101
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccc 245  Q
    ||||||||||| ||  |||||| ||| ||||||||||||| ||||||||||||||  ||||||||||  || |  ||||| ||| |||||||||||||||    
T  12166201 gtcaagtagtttagtagctagagaaattcaccttaaagatgaataagtggggtgtctggggttcgaa-ccccagcccctgcacaaattgtgcattatccc 12166103  T
Q  246 tt 247  Q
    ||    
T  12166102 tt 12166101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 38378338 - 38378238
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccc 245  Q
    ||||||||| | || || |||| ||| |||||||||| || |||||||||||||| |||||||| ||  ||| | ||||| |||||||||||||||||||    
T  38378338 gtcaagtagcttagtgggtagagaaattcaccttaaaaatgaataagtggggtgtccggggttcaaaccccggc-ccctgcacatattgtgcattatccc 38378240  T
Q  246 tt 247  Q
    ||    
T  38378239 tt 38378238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 247
Target Start/End: Complemental strand, 24030090 - 24030004
Alignment:
Q  160 gggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    |||||||| ||| ||||||||||||| ||||| ||||||||  ||||||||||  ||| | ||||  |||||||||||||||||||||    
T  24030090 gggctagagaaattcaccttaaagatgaataaatggggtgtctggggttcgaaccccggc-ccctacacatattgtgcattatccctt 24030004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 247
Target Start/End: Complemental strand, 46243392 - 46243310
Alignment:
Q  164 tagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    |||| ||| ||||||||||| | |||||||||||||||||| ||||||| ||||| ||||| || ||| | |||||||||||||    
T  46243392 tagagaaattcaccttaaaggtgaataagtggggtgttcggagttcgaactccga-tccctatatataatatgcattatccctt 46243310  T

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Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 43440793 - 43440708
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| ||||||||||||||  ||  ||||||  ||||| | ||| |||||||||||||||||||||    
T  43440793 ggctagagaaattcaccttaaagatgaataagtggggtgtctggaattcgaaccccgac-ctctgcacatattgtgcattatccctt 43440708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 247
Target Start/End: Original strand, 3889794 - 3889877
Alignment:
Q  164 tagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    |||| ||| ||||||| ||||| |||||||||||||| |||||||||||  | | | ||||| | ||||||| |||||||||||    
T  3889794 tagagaaattcacctttaagatgaataagtggggtgtccggggttcgaaccctggccccctgcatatattgtacattatccctt 3889877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 10624774 - 10624839
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaa 212  Q
    |||||||||| ||| ||||||| ||| ||||||||||| | |||||||| |||||| ||||||||||    
T  10624774 gtcaagtagtcaagcggctagagaaattcaccttaaag-tgaataagtgcggtgtttggggttcgaa 10624839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 33248805 - 33248878
Alignment:
Q  173 tcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||||||||| ||||||| |||||| |||||||||||  ||||| | ||| | ||||||||||| |||||||    
T  33248805 tcaccttaaagatgaataagtagggtgtccggggttcgaaccccgac-ctctgcatatattgtgcatcatccctt 33248878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 42554726 - 42554653
Alignment:
Q  173 tcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||| ||||||| ||||||| |||| | |||||||||||  || || ||||| |||||||||||||||||||||    
T  42554726 tcaccataaagatgaataagtcgggtatccggggttcgaaccccaac-ccctgcacatattgtgcattatccctt 42554653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 42841757 - 42841823
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaa 212  Q
    ||||||||||| || | ||||| ||| ||||||| ||||| ||||||||||||||  ||||||||||    
T  42841757 gtcaagtagttcagtgtctagagaaattcacctttaagatgaataagtggggtgtctggggttcgaa 42841823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 48258175 - 48258236
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactcc 222  Q
    ||||||| ||| |||| |||||| | ||||| |||||||| ||||||||||| |||||||||    
T  48258175 ggctagacaaattcactttaaaggtgaataaatggggtgtccggggttcgaactccgactcc 48258236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 15025257 - 15025213
Alignment:
Q  164 tagaaaaaatcaccttaaagataaataagtggggtgttcggggtt 208  Q
    |||| ||| ||||||||||| | ||||||||||||||||||||||    
T  15025257 tagagaaattcaccttaaaggtgaataagtggggtgttcggggtt 15025213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 6228251 - 6228336
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| |||||||||||||| |||||||||||  ||| | ||||| |||||||||||||||||||||    
T  6228251 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggc-ccctgcacatattgtgcattatccctt 6228336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 17217062 - 17216977
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| |||||||||||||| ||| ||||||| |||||| ||||  ||||||| |||||||||||||    
T  17217062 ggctagagaaattcaccttaaagatgaataagtggggtgtccggagttcgaactccgac-ccctacacatattatgcattatccctt 17216977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 18903358 - 18903443
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| |||||||||||||| |||||||||||  ||| | ||||| |||||||||| ||||||||||    
T  18903358 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggc-ccctgcacatattgtgtattatccctt 18903443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 20415553 - 20415638
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| |||||||||||||| |||||||||||  | | | ||||| |||||||||||||||||||||    
T  20415553 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccctggc-ccctgcacatattgtgcattatccctt 20415638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 29321952 - 29322052
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccc 245  Q
    ||||||||||  || ||||||| ||| |||||||||||||||||||||||| |||  ||||||||||  || |  ||||| |||||||||||||||||||    
T  29321952 gtcaagtagtctagtggctagagaaattcaccttaaagataaataagtgggatgtctggggttcgaa-ccccagcccctgcacatattgtgcattatccc 29322050  T
Q  246 tt 247  Q
    ||    
T  29322051 tt 29322052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 24794886 - 24794971
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||| |||||| || |||||||||| ||| |||||||||||| || || ||||| |||||||||||||||||||||    
T  24794886 ggctagagaaattcatcttaaatatgaataagtgggatgtccggggttcgaatcccaac-ccctgcacatattgtgcattatccctt 24794971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 147 - 217
Target Start/End: Complemental strand, 7164812 - 7164742
Alignment:
Q  147 tcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccg 217  Q
    |||||||||  || ||||||| ||| ||||||||||| | ||||||||||||| |||||||||||| ||||    
T  7164812 tcaagtagtctagcggctagagaaattcaccttaaaggtgaataagtggggtggtcggggttcgaactccg 7164742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 7954913 - 7954998
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||| ||||||||| |||||||||| ||||||||||||| |   || | ||||| |||||||||||||||||||||    
T  7954913 ggctagagaaattcatcttaaagatgaataagtgggatgttcggggttcgcacctcg-ccccctgcacatattgtgcattatccctt 7954998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 219
Target Start/End: Complemental strand, 9455943 - 9455885
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgac 219  Q
    ||||||||||| ||| ||||||| | ||||||||||||||| |||||||||| ||||||    
T  9455943 ggctagaaaaattcaacttaaaggtgaataagtggggtgtttggggttcgaactccgac 9455885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 247
Target Start/End: Original strand, 4854311 - 4854382
Alignment:
Q  175 accttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||||||| |||||||||||||| |||||||||||  ||| | ||||| ||| ||||| |||||||||||    
T  4854311 accttaaagatgaataagtggggtgtccggggttcgaaccccggc-ccctgcacacattgtacattatccctt 4854382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 31637448 - 31637365
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccc 245  Q
    ||||||| ||| |||||||||| |||||||||| |||||| || || |||||  ||||| ||||| | |||||||||||||||||    
T  31637448 ggctagagaaattcaccttaaaaataaataagtagggtgtccgaggctcgaaccccgac-ccctgcaaatattgtgcattatccc 31637365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 25091090 - 25091172
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatcc 244  Q
    ||||||| ||||||||||| ||||| |||||||||||||| || ||| ||||  |||  |||||| ||| ||||||||||||||    
T  25091090 ggctagagaaaatcacctttaagatgaataagtggggtgtccgaggtacgaaccccg-gtccctgaacaaattgtgcattatcc 25091172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 5641666 - 5641732
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaa 212  Q
    ||||||||||  || ||||||| ||| ||||||||||| | |||||||||||||| ||| |||||||    
T  5641666 gtcaagtagtctagcggctagagaaattcaccttaaaggtgaataagtggggtgtccggagttcgaa 5641732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 19748190 - 19748118
Alignment:
Q  173 tcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    |||||||||| || |||||||||||||| || ||||||||  || | |||||| |||||||||||||||||||||    
T  19748190 tcaccttaaa-atgaataagtggggtgtccgtggttcgaaccccaa-tccctgcacatattgtgcattatccctt 19748118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 35190841 - 35190809
Alignment:
Q  187 aataagtggggtgttcggggttcgaattccgac 219  Q
    |||||||||||||||||||||||||| ||||||    
T  35190841 aataagtggggtgttcggggttcgaactccgac 35190809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 17077465 - 17077380
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||| ||||| |||||||||||||| |||||||||||| ||||| ||||| ||| |||||||||||||||||    
T  17077465 ggctagataaattcacctttaagatgaataagtggggtgtccggggttcgaatcccgac-ccctgcacaaattgtgcattatccctt 17077380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 31250251 - 31250166
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| |||||||||||||| |||||||||||  ||| | ||||| |||||||||||||||||||||    
T  31250251 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggc-ccctgcacatattgtgcattatccctt 31250166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 38503248 - 38503333
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| |||||||||||||| |||||||||||  ||| | ||||| |||||||||||||||||||||    
T  38503248 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggc-ccctgcacatattgtgcattatccctt 38503333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 43227970 - 43227885
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| |||||||||||||| |||||||||||  ||| | ||||| |||||||||||||||||||||    
T  43227970 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggc-ccctgcacatattgtgcattatccctt 43227885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 15470597 - 15470697
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccc 245  Q
    ||||||||||| || ||||||| ||| ||||||||||||| ||||| ||||||||  |||||||||| ||  |  || || |||||||||||||||||||    
T  15470597 gtcaagtagtttagtggctagagaaattcaccttaaagatgaataaatggggtgtctggggttcgaa-tctcagcccttgcacatattgtgcattatccc 15470695  T
Q  246 tt 247  Q
    ||    
T  15470696 tt 15470697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 33545378 - 33545460
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccc 245  Q
    ||||||| ||| ||||||||||||| |||||| ||||||| || ||||| || |||||| ||||| |||||||||||||||||||    
T  33545378 ggctagagaaattcaccttaaagatgaataag-ggggtgtccgaggttcaaactccgac-ccctgcacatattgtgcattatccc 33545460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 178 - 247
Target Start/End: Original strand, 15106895 - 15106963
Alignment:
Q  178 ttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    |||||||| |||||||||||||| |||||||||||  ||||| | ||| ||| |||||||||||||||||    
T  15106895 ttaaagatgaataagtggggtgtccggggttcgaaccccgac-ctctgcacaaattgtgcattatccctt 15106963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 34729590 - 34729491
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccc 245  Q
    |||||||||||||| || |||| ||| ||||||||||| | ||||||||||||| || |||||||||  ||||| ||||| | ||| | |||||||||||    
T  34729590 gtcaagtagttaagcggttagagaaattcaccttaaaggtgaataagtggggtg-tccgggttcgaaccccgac-ccctgcatataatatgcattatccc 34729493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 4395842 - 4395923
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatc 243  Q
    ||||||| ||| ||||||||||||| ||||| ||||||||  |||||||||| |||| | ||||| ||| ||| |||||||||    
T  4395842 ggctagagaaattcaccttaaagatgaataaatggggtgtcaggggttcgaactccggc-ccctgcacacattatgcattatc 4395923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 930914 - 931014
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccc 245  Q
    ||||||||||| || | ||||| ||| ||||||| ||||| |||||||||| |||  | ||||||||  || || ||||| |||||||||||||| ||||    
T  930914 gtcaagtagtttagtgactagagaaattcacctttaagatgaataagtgggatgtctgaggttcgaaccccaac-ccctgcacatattgtgcattgtccc 931012  T
Q  246 tt 247  Q
    ||    
T  931013 tt 931014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 1572228 - 1572163
Alignment:
Q  147 tcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaa 212  Q
    |||||||||  || ||||||| ||| ||||||| ||||| ||||||||||| || |||||||||||    
T  1572228 tcaagtagtctagtggctagagaaattcacctttaagatgaataagtggggagtccggggttcgaa 1572163  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 219
Target Start/End: Original strand, 2029145 - 2029177
Alignment:
Q  187 aataagtggggtgttcggggttcgaattccgac 219  Q
    ||||||||||||||||||||||||||| |||||    
T  2029145 aataagtggggtgttcggggttcgaatcccgac 2029177  T

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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 47864740 - 47864655
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| |||||||||||||| |||||||||||  || || ||||| |||||||||||||||||||||    
T  47864740 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccaac-ccctgcacatattgtgcattatccctt 47864655  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 27471623 - 27471523
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccc 245  Q
    ||||||||||  || ||||||| ||| | ||||||||||| |||||||||||||| |||||||||||  || || ||||||||||||| |||||||||||    
T  27471623 gtcaagtagtctagtggctagagaaatttaccttaaagatgaataagtggggtgtccggggttcgaaccccaac-ccctgtacatattatgcattatccc 27471525  T
Q  246 tt 247  Q
    ||    
T  27471524 tt 27471523  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 32421467 - 32421367
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccc 245  Q
    ||||||||||| || ||||||||||| ||| ||||||||| ||||||||||| ||||| ||||||||  ||||| ||||| | ||||| |||||||||||    
T  32421467 gtcaagtagtttagtggctagaaaaattcatcttaaagatgaataagtggggagttcgaggttcgaaccccgac-ccctgcatatattatgcattatccc 32421369  T
Q  246 tt 247  Q
    ||    
T  32421368 tt 32421367  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 39739393 - 39739293
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccc 245  Q
    ||||||||||  || ||||||| ||| ||||||||||||| |||||||| ||||| |||||||||||  || | |||||| |||||||||||||||||||    
T  39739393 gtcaagtagtctagtggctagagaaattcaccttaaagatgaataagtgaggtgtccggggttcgaa-ccccaatccctgcacatattgtgcattatccc 39739295  T
Q  246 tt 247  Q
    ||    
T  39739294 tt 39739293  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 50381818 - 50381733
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| |||||||||||||| |||| ||||||  ||||| ||||| | |||||||||||||||||||    
T  50381818 ggctagagaaattcaccttaaagatgaataagtggggtgtccgggattcgaaccccgac-ccctgcatatattgtgcattatccctt 50381733  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 243
Target Start/End: Original strand, 44062018 - 44062113
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatc 243  Q
    ||||||||||  || ||||||| | | ||||||||||||| ||||||||||||| |||||||||||| |||| | ||||| |||||||||||||||||    
T  44062018 gtcaagtagtctagtggctagagacattcaccttaaagatgaataagtggggtg-tcggggttcgaactccggc-ccctgcacatattgtgcattatc 44062113  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 46798672 - 46798602
Alignment:
Q  175 accttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccct 246  Q
    ||||||||||| |||||||||||||| | |||||||||| ||| | ||||| ||||||||||||||||||||    
T  46798672 accttaaagatgaataagtggggtgtccagggttcgaatcccggc-ccctgcacatattgtgcattatccct 46798602  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 1325307 - 1325408
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtgggg-tgttcggggttcgaattccgactccctgtacatattgtgcattatcc 244  Q
    ||||||||||  || ||||| | ||| ||| ||||||||| ||||| ||||| ||| |||||||||||| |||| |||||||| ||||||||||||||||    
T  1325307 gtcaagtagtctagtggctaaagaaattcatcttaaagatgaataaatgggggtgtccggggttcgaatcccga-tccctgtatatattgtgcattatcc 1325405  T
Q  245 ctt 247  Q
    |||    
T  1325406 ctt 1325408  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 29645803 - 29645869
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaa 212  Q
    ||||||||||  || ||||||| ||| ||||||||||||| |||||||||||||| |||||||||||    
T  29645803 gtcaagtagtctagtggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaa 29645869  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 31435477 - 31435577
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccc 245  Q
    ||||||||||  || ||||||| ||| ||||||||||||| |||||||||| ||| || ||||||||  || || ||||  |||||||||||||||||||    
T  31435477 gtcaagtagtctagtggctagagaaattcaccttaaagatgaataagtgggatgtccgaggttcgaaccccaac-ccctacacatattgtgcattatccc 31435575  T
Q  246 tt 247  Q
    ||    
T  31435576 tt 31435577  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 247
Target Start/End: Complemental strand, 29226427 - 29226345
Alignment:
Q  164 tagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    |||| ||| ||||||||||||| |||||||||||||| |||||||||||  ||| | ||||| ||||||||||  |||||||||    
T  29226427 tagagaaattcaccttaaagatgaataagtggggtgtacggggttcgaaccccggc-ccctgcacatattgtgtgttatccctt 29226345  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 33528196 - 33528281
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| ||||||||||||||  ||||||||||  || |  ||||| ||| |||||||||||||||||    
T  33528196 ggctagagaaattcaccttaaagatgaataagtggggtgtctggggttcgaa-ccccagcccctgcacaaattgtgcattatccctt 33528281  T

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Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 50676843 - 50676909
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaa 212  Q
    ||||||||||  || || |||| ||| ||||||||||| | ||||||||||||||||||||||||||    
T  50676843 gtcaagtagtctagtggttagagaaattcaccttaaaggtgaataagtggggtgttcggggttcgaa 50676909  T

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Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 247
Target Start/End: Complemental strand, 11483716 - 11483632
Alignment:
Q  162 gctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    |||||| ||| ||||||||||||| |||||||||||||| ||| |||||||  | | | ||||| ||||||| |||||||||||||    
T  11483716 gctagagaaattcaccttaaagatgaataagtggggtgtccggagttcgaaccctggc-ccctgcacatattttgcattatccctt 11483632  T

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Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 48717531 - 48717466
Alignment:
Q  147 tcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaa 212  Q
    |||||||||| || |||| || ||| ||||||||||||| || |||||||||||| ||||||||||    
T  48717531 tcaagtagtttagcggctggagaaattcaccttaaagatgaaaaagtggggtgtttggggttcgaa 48717466  T

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Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 161 - 212
Target Start/End: Complemental strand, 49429564 - 49429513
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaa 212  Q
    ||||||| ||| ||||||||||| | |||||||||||||| |||||||||||    
T  49429564 ggctagagaaattcaccttaaaggtgaataagtggggtgtccggggttcgaa 49429513  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 27817059 - 27817143
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||| ||||||||| ||||| |||||||| |||| |||||| |||| | ||||| ||| |||||||||||||||||    
T  27817059 ggctagagaaattcaacttaaagatgaataaatggggtgtccggg-ttcgaactccggc-ccctgcacaaattgtgcattatccctt 27817143  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 200
Target Start/End: Complemental strand, 38668247 - 38668193
Alignment:
Q  146 gtcaagtagttaaggggctagaaaaaatcaccttaaagataaataagtggggtgt 200  Q
    ||||||||||  || ||||||| ||| ||||||||||||| ||||||||||||||    
T  38668247 gtcaagtagtctagtggctagagaaattcaccttaaagatgaataagtggggtgt 38668193  T

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Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 8258220 - 8258177
Alignment:
Q  197 gtgttcggggttcgaattccgactccctgtacatattgtgcatta 241  Q
    |||||||||||||||| |||||| ||||| |||||||||||||||    
T  8258220 gtgttcggggttcgaactccgac-ccctgcacatattgtgcatta 8258177  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 25165526 - 25165459
Alignment:
Q  180 aaagataaataagtgggg-tgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    |||||| ||||||||||| ||| |||||||||||  |||  |||||| |||||||||||||||||||||    
T  25165526 aaagatgaataagtgggggtgtccggggttcgaaccccgg-tccctgcacatattgtgcattatccctt 25165459  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 209
Target Start/End: Complemental strand, 27394611 - 27394563
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttc 209  Q
    ||||||| ||| ||||||||||| | |||||||||||||| ||||||||    
T  27394611 ggctagagaaattcaccttaaaggtgaataagtggggtgtccggggttc 27394563  T

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Target: scaffold0001 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 247
Target Start/End: Complemental strand, 419816 - 419731
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaattccgactccctgtacatattgtgcattatccctt 247  Q
    ||||||| ||| ||||||||||||| |||||||||||||| |||||||||||  ||| | ||||| ||||||||| |||||||||||    
T  419816 ggctagagaaattcaccttaaagatgaataagtggggtgtccggggttcgaaccccggc-ccctgcacatattgttcattatccctt 419731  T

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Target: scaffold0087 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 44346 - 44397
Alignment:
Q  161 ggctagaaaaaatcaccttaaagataaataagtggggtgttcggggttcgaa 212  Q
    ||||||||||| ||||||||||  |||||||||| |||||||||||||||||    
T  44346 ggctagaaaaattcaccttaaatgtaaataagtgaggtgttcggggttcgaa 44397  T

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