View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_255 (Length: 247)

Name: NF10104A_low_255
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_255
NF10104A_low_255
[»] chr1 (1 HSPs)
chr1 (28-133)||(48996131-48996236)
[»] chr7 (1 HSPs)
chr7 (153-232)||(19728586-19728665)
[»] chr3 (1 HSPs)
chr3 (153-232)||(14867747-14867826)
[»] chr5 (2 HSPs)
chr5 (154-232)||(19513428-19513506)
chr5 (153-231)||(4399977-4400055)
[»] chr8 (2 HSPs)
chr8 (153-232)||(24793850-24793929)
chr8 (153-232)||(11394310-11394388)
[»] chr4 (2 HSPs)
chr4 (153-232)||(42953456-42953535)
chr4 (156-231)||(9992803-9992878)


Alignment Details
Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 28 - 133
Target Start/End: Original strand, 48996131 - 48996236
Alignment:
Q  28 tagtttttccatgccaatggggttttatcccctaaagttggttcatatttatagaaccaatagttgtattcaatatttgtatttatcattagtaggatgc 127  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  48996131 tagtttttccatgccaatgaggttttatcccctaaagttggttcattattatagaaccaatagttgtattcaatatttttatttatcattagtaggatgc 48996230  T
Q  128 tattat 133  Q
    ||||||    
T  48996231 tattat 48996236  T

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Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 19728665 - 19728586
Alignment:
Q  153 ccattggaggtttcacagttcgaggtgcgtatgaggtccttacaatgtctgccaatcccaacagggatagtgctttggat 232  Q
    |||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  19728665 ccattggaggtttcacagttcgaggtgcttatgaggtccttacagcgtctgccaatcccaacagggatagtgctttggat 19728586  T

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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 14867747 - 14867826
Alignment:
Q  153 ccattggaggtttcacagttcgaggtgcgtatgaggtccttacaatgtctgccaatcccaacagggatagtgctttggat 232  Q
    |||||||||||||||||||||||||||| |||||||||||| ||  ||||||||||||||||||||||||||||||||||    
T  14867747 ccattggaggtttcacagttcgaggtgcttatgaggtccttgcagcgtctgccaatcccaacagggatagtgctttggat 14867826  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 19513428 - 19513506
Alignment:
Q  154 cattggaggtttcacagttcgaggtgcgtatgaggtccttacaatgtctgccaatcccaacagggatagtgctttggat 232  Q
    ||||||||||||||||||||||||||| |||||||||||||||  | ||| ||||||||||||||||||||||||||||    
T  19513428 cattggaggtttcacagttcgaggtgcttatgaggtccttacagcgactgtcaatcccaacagggatagtgctttggat 19513506  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 4400055 - 4399977
Alignment:
Q  153 ccattggaggtttcacagttcgaggtgcgtatgaggtccttacaatgtctgccaatcccaacagggatagtgctttgga 231  Q
    ||||||||||||||| |||||||||||| |||||||||||||||  | ||| ||||||||||| |||||||||||||||    
T  4400055 ccattggaggtttcaaagttcgaggtgcttatgaggtccttacagcgactgtcaatcccaacaaggatagtgctttgga 4399977  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 153 - 232
Target Start/End: Complemental strand, 24793929 - 24793850
Alignment:
Q  153 ccattggaggtttcacagttcgaggtgcgtatgaggtccttacaatgtctgccaatcccaacagggatagtgctttggat 232  Q
    |||||||||||||||||||||||||||| ||| |||||||||||  | ||| ||||||||||||||||||||||||||||    
T  24793929 ccattggaggtttcacagttcgaggtgcttataaggtccttacagcgactgtcaatcccaacagggatagtgctttggat 24793850  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 11394310 - 11394388
Alignment:
Q  153 ccattggaggtttcacagttcgaggtgcgtatgaggtccttacaatgtctgccaatcccaacagggatagtgctttggat 232  Q
    ||||||||||||||| |||||||||||| |||||||||||||||  | ||| ||||||||||||||||||||||||||||    
T  11394310 ccattggaggtttca-agttcgaggtgcttatgaggtccttacagcgactgtcaatcccaacagggatagtgctttggat 11394388  T

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Target: chr4 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 42953456 - 42953535
Alignment:
Q  153 ccattggaggtttcacagttcgaggtgcgtatgaggtccttacaatgtctgccaatcccaacagggatagtgctttggat 232  Q
    ||||||||||||||| |||||||||||| |||||||||||||||  | ||| ||||||||||||||||| ||||||||||    
T  42953456 ccattggaggtttcatagttcgaggtgcttatgaggtccttacagcgactgtcaatcccaacagggataatgctttggat 42953535  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 231
Target Start/End: Original strand, 9992803 - 9992878
Alignment:
Q  156 ttggaggtttcacagttcgaggtgcgtatgaggtccttacaatgtctgccaatcccaacagggatagtgctttgga 231  Q
    ||||||||||||||||||||||||| |||||||| || ||| ||  || ||| ||||||| |||||||||| ||||    
T  9992803 ttggaggtttcacagttcgaggtgcttatgaggttctaacagtgcatgtcaaccccaacatggatagtgctatgga 9992878  T

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