View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_26 (Length: 438)
Name: NF10104A_low_26
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 273 - 428
Target Start/End: Complemental strand, 31069397 - 31069242
Alignment:
| Q |
273 |
ctattatcttcttatttatattaacgaaatgtgttgagatgaatcttgtgatattccttgaccatttttggaagaactgaagcaatttctttcattttgt |
372 |
Q |
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| T |
31069397 |
ctattatcttcttatttatattaacgaaatgtgttgagatgaatcttgtgatattccttgaccatttttggaagaactgaagcaatttctttcattttgt |
31069298 |
T |
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| Q |
373 |
cttcggtgttttctatgaaacttgaatcgatattggtgaaatcatcttgatgggtg |
428 |
Q |
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| T |
31069297 |
cttcggtgttttctatgaaacttgaatcgatattggtgaaatcatcttgatgggtg |
31069242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 141 - 210
Target Start/End: Complemental strand, 31069529 - 31069460
Alignment:
| Q |
141 |
agagacacaagggaagaatagggggaatggttttgaagcttaacatcaccttgctgaaggaagaagacat |
210 |
Q |
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| T |
31069529 |
agagacacaagtgaagaatagggggaatggttttgaagcttaacatcaccttgctgaaggaagaagacat |
31069460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 31069667 - 31069596
Alignment:
| Q |
3 |
taaattattcttgagttctaccgtcatttctcttcccacaaaatctttaaagtagcagaagaacaacttcat |
74 |
Q |
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| T |
31069667 |
taaatcattcttgagttctaccgtcatttctcttcccgcaaaatctttcaagtagcagaagaacaacttcat |
31069596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 37614398 - 37614334
Alignment:
| Q |
10 |
ttcttgagttctaccgtcatttctcttcccacaaaatctttaaagtagcagaagaacaacttcat |
74 |
Q |
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| T |
37614398 |
ttcttgagttcaaccgtcacttctcttcccaccaaatctttgaagtacgagaagaacagcttcat |
37614334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 42440506 - 42440446
Alignment:
| Q |
10 |
ttcttgagttctaccgtcatttctcttcccacaaaatctttaaagtagcagaagaacaact |
70 |
Q |
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| T |
42440506 |
ttcttgagttctaccgtaacttctcttcccaccaaatctttgaagtatgagaagaacaact |
42440446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 309 - 427
Target Start/End: Original strand, 11592990 - 11593109
Alignment:
| Q |
309 |
agatgaatcttgtgatattccttgacc-atttttggaagaactgaagcaatttctttcattttgtcttcggtgttttctatgaaacttgaatcgatattg |
407 |
Q |
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| T |
11592990 |
agatgcatcttgtgaaattccttgacccatgtttggaagaacagaagcagcttctttgattctgtctttggtgttttctatgaaaccagaatccatgttg |
11593089 |
T |
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| Q |
408 |
gtgaaatcatcttgatgggt |
427 |
Q |
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| T |
11593090 |
gtgtaatcttgttgatgggt |
11593109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 309 - 427
Target Start/End: Complemental strand, 11645129 - 11645010
Alignment:
| Q |
309 |
agatgaatcttgtgatattccttgacc-atttttggaagaactgaagcaatttctttcattttgtcttcggtgttttctatgaaacttgaatcgatattg |
407 |
Q |
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| T |
11645129 |
agatgcatcttgtgaaattccttgacccatgtttggaagaacagaagcagcttctttgattctgtctttggtgttttctatgaaaccagaatccatgttg |
11645030 |
T |
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| Q |
408 |
gtgaaatcatcttgatgggt |
427 |
Q |
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| T |
11645029 |
gtgtaatcttgttgatgggt |
11645010 |
T |
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