View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_260 (Length: 246)
Name: NF10104A_low_260
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_260 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 12325238 - 12325464
Alignment:
| Q |
20 |
tcattttggtccgcaaatgtgtgatctgactaattgaatatgctttcgaggaccaaacaaattaacgaaaaacacaatgtatggtaaatagtaactctaa |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12325238 |
tcattttggtccgcaaatgtgtgatctgactaattgaatacgctttcgaggaccaaacaaattaacgaaaaacacaatgtatggtaaatagtaactctaa |
12325337 |
T |
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| Q |
120 |
ctctcccttatagtattaaaataaaagaagttcagaacacaatgtatggaggaatgtaaatcatttttactgtccacaagatgtggaaactaaaaaacat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12325338 |
ctctcccttatagtattaaaataaaagaagttcagaacacaatgtatggaggaatgtaaatcatttttactgtccacaagatgtggaaactaaaaaacat |
12325437 |
T |
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| Q |
220 |
gaaatgtagggattataaaaccataaa |
246 |
Q |
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||||||||||||||||||||||||||| |
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| T |
12325438 |
gaaatgtagggattataaaaccataaa |
12325464 |
T |
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