View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10104A_low_262 (Length: 245)
Name: NF10104A_low_262
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_262 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 6917674 - 6917430
Alignment:
| Q |
1 |
gagtgtttgtgatcaatattattattgaataataagtctgtgcatttagcattttatattgagtgtgctcaaacaacaagcaaaaggaaaatcagaacct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
6917674 |
gagtgtttgtgatcaatattattattgaataataagtctgtgcatttagcattttatattgagtgtgctcaaacaacaagcaaatggaaaatcagaacct |
6917575 |
T |
|
| Q |
101 |
atatgtttcggaatcaacctcgccgcgctcaatcttgatggcctggaacttgcctttctggacagttgtgacctctgtatggggagcgaagtgctcccgg |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6917574 |
atatgtttcgaaatcaacctcgccgcgctcaatcttgatggcctggaacttgccattctggacagttgtgacctctgtatggggagcgaagtgctcccgg |
6917475 |
T |
|
| Q |
201 |
cttcaaactcgtctccggatagtacctgtttcctgttgcagaact |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6917474 |
cttcaaactcgtctccggatagtacctgttccctgttgcagaact |
6917430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University