View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_273 (Length: 242)
Name: NF10104A_low_273
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_273 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 13578284 - 13578051
Alignment:
| Q |
9 |
ggtgtttaaaaatatgtttaactaaaattcgaataattaataaatgactctaaagtacattgatgcataatgtttatctctttagctcatagtatagacc |
108 |
Q |
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| T |
13578284 |
ggtgtttaaaaatatgtttaactaaaattcgaataattaataaatgactctaaagtacattgatgcataatgtttatctctttagctcatagtatagacc |
13578185 |
T |
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| Q |
109 |
ttccatgaaaacattagttgtaattagaatttattcttgtttatcaacctttcannnnnnnnnnnnnnnnncctatcctttcatactagagagtggaaaa |
208 |
Q |
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| T |
13578184 |
ttccatgaaaacattagttgtaattagaatttattcttgtttatcaacctttcatttttattttattttttcctatcctttcatactagagagtggaaaa |
13578085 |
T |
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| Q |
209 |
ccaacattagtttatgttggtatgagtggaatgg |
242 |
Q |
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| T |
13578084 |
ccaacattagtttatgttggtatgagtggaatgg |
13578051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 6 - 162
Target Start/End: Complemental strand, 13569783 - 13569627
Alignment:
| Q |
6 |
tatggtgtttaaaaatatgtttaactaaaattcgaataattaataaatgactctaaagtacattgatgcataatgtttatctctttagctcatagtatag |
105 |
Q |
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| T |
13569783 |
tatggtgtttaaaaatatgtttgattaaaattagaataattaataaatgactctaaattacattgatgcataatgtttatctctttagctcatagaatag |
13569684 |
T |
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| Q |
106 |
accttccatgaaaacattagttgtaattagaatttattcttgtttatcaacctttca |
162 |
Q |
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| T |
13569683 |
accttcgatgaaaacattaattgtaattataatttattcttgcttatcaacctttca |
13569627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 185 - 242
Target Start/End: Complemental strand, 13569633 - 13569576
Alignment:
| Q |
185 |
cctttcatactagagagtggaaaaccaacattagtttatgttggtatgagtggaatgg |
242 |
Q |
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| T |
13569633 |
cctttcatactagagagtggaaaaccaacattagtttatgttggtatgtgtggaatgg |
13569576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 31 - 160
Target Start/End: Complemental strand, 13584003 - 13583876
Alignment:
| Q |
31 |
taaaattcgaataattaataaatgactctaaagtacattgatgcataatgtttatctctttagctcatagtatagaccttccatgaaaacattag-ttgt |
129 |
Q |
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| T |
13584003 |
taaaattagaatagtcattaaatgactctaaagtacatttatgcacaatgtttatccctttagctcgtataatagaccttacattaaaa---tagcttgt |
13583907 |
T |
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| Q |
130 |
aattagaatttattcttgtttatcaaccttt |
160 |
Q |
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| T |
13583906 |
aattagagattattcttatttaccaaccttt |
13583876 |
T |
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