View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_274 (Length: 242)

Name: NF10104A_low_274
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_274
NF10104A_low_274
[»] chr1 (3 HSPs)
chr1 (20-242)||(32253987-32254215)
chr1 (73-242)||(32243517-32243686)
chr1 (73-242)||(32249255-32249424)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 32253987 - 32254215
Alignment:
Q  20 caatccgcagtcataaacaccggcatcataaaagtacaatttataacacataa------ttatacttatacttactctgggggttgaatcgagctggttt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||    
T  32253987 caatccgcagtcataaacaccggcatcataaaagtacaatttataacacataattataattatacttatacttactctgggggttgaatcgagctggttt 32254086  T
Q  114 acaaagctggaggtgtcgagaagactaatggcaacaagaggttcttcaccatggttataggtccagtaaggagttccagctggaatggcaatgacatcac 213  Q
    |||||| |||||||||||||||||||||| ||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32254087 acaaagttggaggtgtcgagaagactaatagcaacaataggttcttgaccatggttatatgtccagtaaggagttccagctggaatggcaatgacatcac 32254186  T
Q  214 ctctgtagaagcgacgaatcttctggtgg 242  Q
    |||||||||||||||||||||||||||||    
T  32254187 ctctgtagaagcgacgaatcttctggtgg 32254215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 73 - 242
Target Start/End: Original strand, 32243517 - 32243686
Alignment:
Q  73 ttatacttatacttactctgggggttgaatcgagctggtttacaaagctggaggtgtcgagaagactaatggcaacaagaggttcttcaccatggttata 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||    
T  32243517 ttatacttatacttactctgggggttgaatcgagctggtttacaaagctggaggtgtcgagaagactaatagcaacaataggttcttgaccatggttata 32243616  T
Q  173 ggtccagtaaggagttccagctggaatggcaatgacatcacctctgtagaagcgacgaatcttctggtgg 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32243617 ggtccagtaaggagttccagctggaatggcaatgacatcacctctgtagaagcgacgaatcttctggtgg 32243686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 73 - 242
Target Start/End: Original strand, 32249255 - 32249424
Alignment:
Q  73 ttatacttatacttactctgggggttgaatcgagctggtttacaaagctggaggtgtcgagaagactaatggcaacaagaggttcttcaccatggttata 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  32249255 ttatacttatacttactctgggggttgaatcgagctggtttacaaagttggaggtgtcaagaagactaatggcaacaagaggttcttgaccatggttata 32249354  T
Q  173 ggtccagtaaggagttccagctggaatggcaatgacatcacctctgtagaagcgacgaatcttctggtgg 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32249355 ggtccagtaaggagttccagctggaatggcaatgacatcacctctgtagaagcgacgaatcttctggtgg 32249424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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