View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_276 (Length: 242)
Name: NF10104A_low_276
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_276 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 4 - 242
Target Start/End: Original strand, 40688205 - 40688443
Alignment:
| Q |
4 |
aatattaggttattgactatacttataatatcgatgtggaattacatgcaattttgctcatagtttggttttgatcacttgggatattggagtaacggtt |
103 |
Q |
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| T |
40688205 |
aatattaggttattgactatacttataatatcgatgttgaattacatgcaattttgctcatagtttggttctgatcacttgggatattggagtaacggtt |
40688304 |
T |
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| Q |
104 |
ttaaggaagccatttgtgaatctaactgcaagactatctccaatctgatagaatctgagtgtaaggaataatcctatatacattcatccttatgctccca |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
40688305 |
ttaaggaagccatttgtgaatctaactgcaagactatctccaatctgatagaatctgagtgtaaggaataatcctatatacactcatccttatgctccca |
40688404 |
T |
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| Q |
204 |
tcattcaatatgttagatcctttatgaatgcctctaatt |
242 |
Q |
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| T |
40688405 |
tcattcaatatgttagatcctttatgaatgcctctaatt |
40688443 |
T |
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