View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_278 (Length: 242)
Name: NF10104A_low_278
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_278 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 231
Target Start/End: Complemental strand, 38716834 - 38716620
Alignment:
| Q |
20 |
aaatcaacattcttatatatgattattgataataagtacaccagaagaaactggccattcatcaaaattacaaatcacaaactcttacaagaaaagagaa |
119 |
Q |
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| T |
38716834 |
aaatcaacattcttatatatgattattgataataagtacaccagaagaaactggccattcatcaaaattacaaatcacaaactcttacaagaaaagagaa |
38716735 |
T |
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| Q |
120 |
tgagggaaagaacatatgaagatttgaaggg-nnnnnnnnnnnnntatatacaaatcacataaggaccttgaaataatagaag--aaaaccatgtactta |
216 |
Q |
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|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||| || |
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| T |
38716734 |
tgagggaaagaacatatgaaaatttgaagggaaaaaaaagaaaaatatatacaaatcacataaggaccttgaaataataggagaaaaaaccatgtacata |
38716635 |
T |
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| Q |
217 |
aataattcaacttat |
231 |
Q |
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||||||||||||||| |
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| T |
38716634 |
aataattcaacttat |
38716620 |
T |
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