View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_287 (Length: 240)
Name: NF10104A_low_287
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_287 |
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| [»] scaffold0559 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 40805882 - 40806076
Alignment:
| Q |
19 |
aatatgtgtaagtgtgtaacctgcttatttatatgcctattctattttaggccctactaaactaatttggccatttcatggaagcactttttggagagaa |
118 |
Q |
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| T |
40805882 |
aatatgtgtaagtgtgtaacctgcttatttatatgcctattctattttaggccctactaaactaatttggccatttcatggaagcactttttggagagaa |
40805981 |
T |
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| Q |
119 |
tttagtataatatcataccacttgtgggaaaagtgcttcaaattagttaattaattactaaccgaataaaaaagagtgacgaagttcaaaccccc |
213 |
Q |
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| T |
40805982 |
ttcagtataatatcataccacttgtgggaaaagtgcttcaaattagttaattaattactaaccaaataaaaaagagtgacgaagttcaaaccccc |
40806076 |
T |
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Target: scaffold0559 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 8761 - 8566
Alignment:
| Q |
19 |
aatatgtgtaagtgtgtaacctgcttatttatatgcctattctattttaggccctactaaactaatttggccatttcatggaagcacttttt-ggagaga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8761 |
aatatgtgtaagtgtgtaacctgcttatttatatgcctattctattttaggccctactaaactaatttggccatttcatggaagcacttttttggagaga |
8662 |
T |
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| Q |
118 |
atttagtataatatcataccacttgtgggaaaagtgcttcaaattagttaattaattactaaccgaataaaaaagagtgacgaagttcaaaccccc |
213 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8661 |
attcagtataatatcataccacttgtgggaaaagtgcttcaaattagttaattaattactaaccaaataaaaaagagtgacgaagttcaaaccccc |
8566 |
T |
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