View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_29 (Length: 433)
Name: NF10104A_low_29
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_29 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 6 - 433
Target Start/End: Complemental strand, 45099455 - 45099028
Alignment:
| Q |
6 |
agattttgttatagattatggaacaaggttggttggtccttctggtgtggaagagtatagaaatctttcatctcaggttttggaaactgttcataggatt |
105 |
Q |
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| T |
45099455 |
agattttgttatagattatggaacaaggttggttggtccttctggtgtggaagagtatagaaatctttcatctcaggttttggaaactgttcataggatt |
45099356 |
T |
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| Q |
106 |
aatgtaggaggtatgaaaataactccttttaatgataccctttggagaacttggattcctgatgaggattatttggtttttaaggaagcagctaaacatg |
205 |
Q |
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| T |
45099355 |
aatgtaggaggtatgaaaataactccttttaatgacaccctttggagaacttggattcctgatgaggattatttggtttttaaggaagcagctaaacatg |
45099256 |
T |
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| Q |
206 |
cagtaagcactcatacacctgattaccagaagggaggtgctactccagagatcgcacctgaaaatgtttacatgactgctcaacagatgaatagggaaaa |
305 |
Q |
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| T |
45099255 |
cagtaagcactcatacacctgattaccagaagggaggtgctactccagagatcgcgcctgaaaatgtttacatgactgctcaacagatgaatagggaaaa |
45099156 |
T |
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| Q |
306 |
ctcaagtttagcttcaaggtttaatataacatggaattttcctgtggctcgtgatggcgtttcacatttgattcggttgcatttttgtgatattgttagt |
405 |
Q |
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| T |
45099155 |
ctcaagtttagcttcaaggtttaatataacatggaattttcctgtggctcgtgatggcgtttcacatttgattcggttgcatttttgtgatattgttagt |
45099056 |
T |
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| Q |
406 |
acttcgctcaacttgctttactttgatg |
433 |
Q |
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| T |
45099055 |
acttcgctcaacttgctttactttgatg |
45099028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 82 - 302
Target Start/End: Original strand, 17348638 - 17348858
Alignment:
| Q |
82 |
gttttggaaactgttcataggattaatgtaggaggtatgaaaataactccttttaatgataccctttggagaacttggattcctgatgaggattatttgg |
181 |
Q |
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| T |
17348638 |
gttttagaaactattcataggattaatgttggaggtgaaaaattaactccttttaatgataccctttggagaacatggattcctgataaggattttctgg |
17348737 |
T |
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| Q |
182 |
tttttaaggaagcagctaaacatgcagtaagcactcatacacctgattaccagaagggaggtgctactccagagatcgcacctgaaaatgtttacatgac |
281 |
Q |
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| T |
17348738 |
tttttaaggatgcagctaaggctgtagtgagcactcacacaccagattatcagaaagggggcgcggctagagagatcgcgccggatagtgtttatatgac |
17348837 |
T |
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| Q |
282 |
tgctcaacagatgaataggga |
302 |
Q |
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| T |
17348838 |
tgctcaggagatgaataggga |
17348858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 17363885 - 17363945
Alignment:
| Q |
81 |
ggttttggaaactgttcataggattaatgtaggaggtatgaaaataactccttttaatgat |
141 |
Q |
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| T |
17363885 |
ggttttagaaactattcataggattaacgttgatggtttgaaaataactccctttaatgat |
17363945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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