View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10104A_low_290 (Length: 238)
Name: NF10104A_low_290
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_290 |
 | |
|
| [»] chr8 (5 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 4124241 - 4124004
Alignment:
| Q |
1 |
aatatatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4124241 |
aatatatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaaccaaatg |
4124142 |
T |
|
| Q |
101 |
gtgttattatatggtcaacaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4124141 |
gtgttattatatggtcaacaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagc |
4124042 |
T |
|
| Q |
201 |
aacaatctgggatagtttcacacacccagcagatgcag |
238 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4124041 |
aacaatctgggatagtttcacacaccctgcagatgcag |
4124004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 4153591 - 4153354
Alignment:
| Q |
1 |
aatatatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
4153591 |
aatatatggattgcaaacagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaattttataatattgaacaaaccaaatg |
4153492 |
T |
|
| Q |
101 |
gtgttattatatggtcaacaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4153491 |
gtgttattatatggtcaacaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttccggagc |
4153392 |
T |
|
| Q |
201 |
aacaatctgggatagtttcacacacccagcagatgcag |
238 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4153391 |
aacaatctgggatagtttcacacaccctgcagatgcag |
4153354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 4 - 234
Target Start/End: Complemental strand, 4134783 - 4134553
Alignment:
| Q |
4 |
atatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggtg |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4134783 |
atatggattgcaaacagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggta |
4134684 |
T |
|
| Q |
104 |
ttattatatggtcaacaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagcaac |
203 |
Q |
| |
|
| || || ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||| | ||||| |||| |||||||||||| |
|
|
| T |
4134683 |
tcatcatttggtcaacaaacatttcatcttcaacaaattcaacagctaaacttgatgatgcagggaacttgattctaagagacatcaattctggagcaac |
4134584 |
T |
|
| Q |
204 |
aatctgggatagtttcacacacccagcagat |
234 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |
|
|
| T |
4134583 |
aatctgggatagtttcacacaccctgcagat |
4134553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 4145585 - 4145362
Alignment:
| Q |
4 |
atatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatggtg |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
4145585 |
atatggattgcaaacagagatcaaccactcaaagattcaaatggaattgtcacaattcacaaaaatggaaatcttgtaattttgaacaaaccaaatggca |
4145486 |
T |
|
| Q |
104 |
ttattatatggtcaacaaacatttcatcttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttctggagcaac |
203 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| ||||||||| | ||||| |||| |||||||||||| |
|
|
| T |
4145485 |
gcatcatttggtcaacaaacatttcatcttcaacaaattcaacagctaaacttgatgatgcagggaacttgattctaagagacatcaattctggagcaac |
4145386 |
T |
|
| Q |
204 |
aatctgggatagtttcacacaccc |
227 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4145385 |
aatctgggatagtttcacacaccc |
4145362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 4163950 - 4163709
Alignment:
| Q |
1 |
aatatatggattgcaaacagagatcaaccactcaaagattcaaatggaatagtcacaattcacaaagatggaaatcttgtaatattgaacaaaccaaatg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
|
|
| T |
4163950 |
aatatatggattgcaaacagagatcaaccactcaaggattcaaatggaatagtcacaattcacaaaaatggaaatcttgtaatattgaacaaagaaaatg |
4163851 |
T |
|
| Q |
101 |
gtgttattatatggtcaacaaacatttca--tc----ttcaacaaattcaacagctcaacttgctgattcaggaaacttgattttgagagatatcagttc |
194 |
Q |
| |
|
|| || || |||||||||| ||||||| || ||||| |||||| ||||||||||||| |||| ||||||||||||| | || || |||| ||| |
|
|
| T |
4163850 |
gtagcatcatttggtcaacaagcatttcaagtccaaattcaataaattccacagctcaacttgttgatgtaggaaacttgattctaagtgacatcaattc |
4163751 |
T |
|
| Q |
195 |
tggagcaacaatctgggatagtttcacacacccagcagatgc |
236 |
Q |
| |
|
| || ||||||| |||||||||||||| ||||| || ||||| |
|
|
| T |
4163750 |
tagatcaacaatttgggatagtttcactcaccctgcggatgc |
4163709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University