View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_294 (Length: 237)

Name: NF10104A_low_294
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_294
NF10104A_low_294
[»] chr3 (3 HSPs)
chr3 (5-231)||(53984798-53985024)
chr3 (6-228)||(53971094-53971315)
chr3 (167-223)||(53071908-53071964)
[»] chr4 (1 HSPs)
chr4 (167-228)||(34036297-34036358)
[»] chr2 (1 HSPs)
chr2 (167-231)||(6688093-6688157)
[»] chr1 (1 HSPs)
chr1 (168-228)||(16163998-16164058)
[»] chr7 (3 HSPs)
chr7 (167-208)||(19935380-19935421)
chr7 (167-208)||(19966519-19966560)
chr7 (167-214)||(31014482-31014529)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 5 - 231
Target Start/End: Original strand, 53984798 - 53985024
Alignment:
Q  5 actgagatgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaag 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53984798 actgagatgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaag 53984897  T
Q  105 acgtgtgtagaggtagatctaccaaattaaattaaatcgtcaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggacta 204  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53984898 acgtgtgtagaggtagatttaccaaattaaattaaatcgtcaaattatccttatcatatcttaaacctgatgaatggtaagatgttgaagtttgggacta 53984997  T
Q  205 tgttgaagcacgtctagcatccacttc 231  Q
    |||||||||||||||||||||||||||    
T  53984998 tgttgaagcacgtctagcatccacttc 53985024  T

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Target: chr3; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 53971094 - 53971315
Alignment:
Q  6 ctgagatgaaatgcacgtcggaatattttgtggatagtgccaaatgtcctcataaattccattctctatttcctgtaataagatggagggagcattaaga 105  Q
    |||||||||||| || ||||||| ||||||||| |  |||||| |||||||||||||||||| ||| || ||||  ||||||| |||||| | | |||||    
T  53971094 ctgagatgaaatacatgtcggaacattttgtgggtcctgccaattgtcctcataaattccatcctccatctcctacaataagacggagggggtagtaaga 53971193  T
Q  106 cgtgtgtagaggtagatctaccaaattaaattaaatcgtcaaattatccttatcata-tcttaaacctgatgaatggtaagatgttgaagtttgggacta 204  Q
    | |||  ||||||| || ||||||||||||||||||| |||||||||||| |||||| | | | ||||||||||||||||||||||||||||| ||||||    
T  53971194 catgt--agaggtatatttaccaaattaaattaaatcatcaaattatcctaatcatagtatcatacctgatgaatggtaagatgttgaagtttcggacta 53971291  T
Q  205 tgttgaagcacgtctagcatccac 228  Q
    ||||  ||||||||||||||||||    
T  53971292 tgttagagcacgtctagcatccac 53971315  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 223
Target Start/End: Complemental strand, 53071964 - 53071908
Alignment:
Q  167 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagca 223  Q
    |||||| ||||||| ||||||||||||| || ||||| ||||||||||  |||||||    
T  53071964 aaacctcatgaatgataagatgttgaagctttggactgtgttgaagcatttctagca 53071908  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 34036358 - 34036297
Alignment:
Q  167 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccac 228  Q
    |||||| ||||||| ||||||||||||| |||||||| ||||||||||  ||||||||||||    
T  34036358 aaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctagcatccac 34036297  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 167 - 231
Target Start/End: Complemental strand, 6688157 - 6688093
Alignment:
Q  167 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccacttc 231  Q
    |||||| ||||||| ||||||||||||| |||||||| ||||||||||  |||| ||||||||||    
T  6688157 aaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctaccatccacttc 6688093  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 16163998 - 16164058
Alignment:
Q  168 aacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagcatccac 228  Q
    |||||||||||||| |||||||| ||| ||||| || ||||||||||| ||||||||||||    
T  16163998 aacctgatgaatggcaagatgttcaagcttgggcctctgttgaagcacttctagcatccac 16164058  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 19935421 - 19935380
Alignment:
Q  167 aaacctgatgaatggtaagatgttgaagtttgggactatgtt 208  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  19935421 aaacctgatgaatggtaagattttgaagtttgggacaatgtt 19935380  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 208
Target Start/End: Complemental strand, 19966560 - 19966519
Alignment:
Q  167 aaacctgatgaatggtaagatgttgaagtttgggactatgtt 208  Q
    ||||||||||||||||||||| |||||||||||||| |||||    
T  19966560 aaacctgatgaatggtaagattttgaagtttgggacaatgtt 19966519  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 31014529 - 31014482
Alignment:
Q  167 aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagca 214  Q
    |||||| ||||||| ||||||||||||| |||||||| ||||||||||    
T  31014529 aaaccttatgaatgataagatgttgaagcttgggactgtgttgaagca 31014482  T

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