View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_297 (Length: 235)
Name: NF10104A_low_297
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_297 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 17435823 - 17435599
Alignment:
| Q |
11 |
atgaataataccgacacactcaattattttatgtcaaacaaagcctaactctgtcgtttccaggctctctttttgaggtacacagtctcttctacatgct |
110 |
Q |
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| T |
17435823 |
atgaataataccgacacactcaattattttatgtcaaacaaagcctaactctgtcgtttccaggctctctttttgaggtacacaatctcttctacatgct |
17435724 |
T |
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| Q |
111 |
cttgtttcttgtattgctgagaatttcttcagttttacaattcatatgacgcaaaatttcaatttggtgtcagattttatattaatattctttcatatat |
210 |
Q |
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| T |
17435723 |
cttgtttgttatatagctgagaatttcttcagttttacaattcatatgacgcaaaatctcaatttggtgtcagattttatattaatatcctttcatatat |
17435624 |
T |
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| Q |
211 |
ccaatcttgatcatatacttgcata |
235 |
Q |
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| T |
17435623 |
ccaatcttgatcatatacttgcata |
17435599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 17456897 - 17456753
Alignment:
| Q |
12 |
tgaataataccgacacactcaattattttatgtcaaacaaagcctaactctgtcgtttccaggctctctttttgaggtacacagtctcttctacatgctc |
111 |
Q |
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| T |
17456897 |
tgaataatatcaacacactcaattattttatgtcaaacaaagcctaactctgtcgtttccaggctctctttttgaggtacacaatctcttctacatgctt |
17456798 |
T |
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| Q |
112 |
ttgtttcttgtattgctgagaatttcttcagttttacaattcata |
156 |
Q |
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| T |
17456797 |
ttgtttcttgtattgctgagaatttctccagttttacaattcata |
17456753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 17456727 - 17456664
Alignment:
| Q |
171 |
aatttggtgtcagattttatattaatattctttcatatatccaatcttgatcatatacttgcata |
235 |
Q |
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| T |
17456727 |
aatttgatgtcaaattttatattgtt-ttctttcatatatccattttttatcatatacttgcata |
17456664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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