View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_298 (Length: 235)

Name: NF10104A_low_298
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_298
NF10104A_low_298
[»] chr6 (14 HSPs)
chr6 (6-131)||(17095606-17095739)
chr6 (6-78)||(16870346-16870418)
chr6 (42-168)||(17067043-17067177)
chr6 (13-78)||(16985125-16985190)
chr6 (6-46)||(16794920-16794960)
chr6 (6-50)||(16841534-16841578)
chr6 (79-168)||(16655635-16655728)
chr6 (6-57)||(16975728-16975779)
chr6 (121-156)||(16985033-16985068)
chr6 (6-41)||(17067196-17067231)
chr6 (6-36)||(16655782-16655812)
chr6 (8-36)||(16558494-16558522)
chr6 (6-34)||(16778898-16778926)
chr6 (6-34)||(16784994-16785022)
[»] chr3 (2 HSPs)
chr3 (6-128)||(7055690-7055816)
chr3 (6-46)||(38941762-38941802)
[»] chr8 (1 HSPs)
chr8 (6-91)||(13375738-13375832)
[»] scaffold0133 (3 HSPs)
scaffold0133 (6-46)||(10558-10598)
scaffold0133 (6-46)||(15855-15895)
scaffold0133 (6-34)||(6222-6250)
[»] scaffold0256 (1 HSPs)
scaffold0256 (6-34)||(6881-6909)


Alignment Details
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 17095739 - 17095606
Alignment:
Q  6 aagattggcataagatagctcacattcctgaatttaaattggaatctgatgtaaaaccaacatttcgtggtaa--------aatttaatgaatctcttta 97  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||        |||||||||||||||||||    
T  17095739 aagattggcattagatagctcacattcctgaatttgaattggaaactgatgcaaaaccaacatttcgtggtaatttaatttaatttaatgaatctcttta 17095640  T
Q  98 cttgttcatttatcttttgtcttactatatcaaa 131  Q
    ||||||||||||||||||||||||||||||||||    
T  17095639 cttgttcatttatcttttgtcttactatatcaaa 17095606  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 16870346 - 16870418
Alignment:
Q  6 aagattggcataagatagctcacattcctgaatttaaattggaatctgatgtaaaaccaacatttcgtggtaa 78  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||  ||||||||||||| |||||||    
T  16870346 aagattggcataagatagctcacattcctgaattttatttggaatctgataaaaaaccaacattttgtggtaa 16870418  T

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Target: chr6; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 168
Target Start/End: Complemental strand, 17067177 - 17067043
Alignment:
Q  42 aattggaatctgatgtaaaaccaacatttcgtggtaa---aatttaatgaatctctttacttgtt--catttatcttttgtcttactata---tcaaatt 133  Q
    ||||| ||||||||| |||||||||| || |||||||   ||||||| ||||||||| | || ||  | ||| | |||||||||||||||   | |||||    
T  17067177 aattgcaatctgatgcaaaaccaacaatttgtggtaatttaatttaacgaatctcttaattttttttcctttcttttttgtcttactatagaataaaatt 17067078  T
Q  134 atatagtgtgattttagacttattatattgaacaa 168  Q
    ||||| |||||||||||||||||||||||||||||    
T  17067077 atatactgtgattttagacttattatattgaacaa 17067043  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 16985190 - 16985125
Alignment:
Q  13 gcataagatagctcacattcctgaatttaaattggaatctgatgtaaaaccaacatttcgtggtaa 78  Q
    |||||||||||||||||||||||||||| | || ||||||| || |||||||||||| | ||||||    
T  16985190 gcataagatagctcacattcctgaattttattttgaatctggtgcaaaaccaacattccctggtaa 16985125  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 16794960 - 16794920
Alignment:
Q  6 aagattggcataagatagctcacattcctgaatttaaattg 46  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  16794960 aagattggcataagatagctcacgttcctgaatttgaattg 16794920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 16841578 - 16841534
Alignment:
Q  6 aagattggcataagatagctcacattcctgaatttaaattggaat 50  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||    
T  16841578 aagattggcataagatagctcacattcctagattgaaattggaat 16841534  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 168
Target Start/End: Complemental strand, 16655728 - 16655635
Alignment:
Q  79 aatttaatgaatctctttacttg-ttcatttatcttttgtcttactata---tcaaattatatagtgtgattttagacttattatattgaacaa 168  Q
    ||||||| ||||| ||||| ||| ||| ||| |||||||| ||||||||   |||||| | || |||||||| |||||||||||||||||||||    
T  16655728 aatttaacgaatccctttatttgattcctttgtcttttgtgttactataatatcaaatcagatggtgtgattatagacttattatattgaacaa 16655635  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 16975728 - 16975779
Alignment:
Q  6 aagattggcataagatagctcacattcctgaatttaaattggaatctgatgt 57  Q
    |||||||| |||||| ||||||  ||||| ||||||||||||||||||||||    
T  16975728 aagattggtataagacagctcatgttcctaaatttaaattggaatctgatgt 16975779  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 156
Target Start/End: Complemental strand, 16985068 - 16985033
Alignment:
Q  121 actatatcaaattatatagtgtgattttagacttat 156  Q
    ||||||||||||||||| ||||||||||||||||||    
T  16985068 actatatcaaattatatggtgtgattttagacttat 16985033  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 17067231 - 17067196
Alignment:
Q  6 aagattggcataagatagctcacattcctgaattta 41  Q
    ||||||||||||| ||||||||||||||||||||||    
T  17067231 aagattggcataaaatagctcacattcctgaattta 17067196  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 16655812 - 16655782
Alignment:
Q  6 aagattggcataagatagctcacattcctga 36  Q
    |||||||||||||||||||||||||||||||    
T  16655812 aagattggcataagatagctcacattcctga 16655782  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 16558494 - 16558522
Alignment:
Q  8 gattggcataagatagctcacattcctga 36  Q
    |||||||||||||||||||||||||||||    
T  16558494 gattggcataagatagctcacattcctga 16558522  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 16778926 - 16778898
Alignment:
Q  6 aagattggcataagatagctcacattcct 34  Q
    |||||||||||||||||||||||||||||    
T  16778926 aagattggcataagatagctcacattcct 16778898  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 16785022 - 16784994
Alignment:
Q  6 aagattggcataagatagctcacattcct 34  Q
    |||||||||||||||||||||||||||||    
T  16785022 aagattggcataagatagctcacattcct 16784994  T

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Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 6 - 128
Target Start/End: Original strand, 7055690 - 7055816
Alignment:
Q  6 aagattggcataagatagctcacattcctgaatttaaattggaatctgatgtaaaaccaacatttcgtggtaa---aatttaatgaatctcttta-cttg 101  Q
    |||||||||||||||||||||||||||| | ||| | |||||||||||||| |||| || ||||| |||||||   |||||||| |||| |||||  ||     
T  7055690 aagattggcataagatagctcacattccggcattgatattggaatctgatgcaaaaacatcattttgtggtaatttaatttaatcaatccctttatatta 7055789  T
Q  102 ttcatttatcttttgtcttactatatc 128  Q
    ||| ||| |||||| ||||||||||||    
T  7055790 ttcctttctcttttttcttactatatc 7055816  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 38941762 - 38941802
Alignment:
Q  6 aagattggcataagatagctcacattcctgaatttaaattg 46  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  38941762 aagattggcataagatagctcacattcctgaatttgaattg 38941802  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 13375832 - 13375738
Alignment:
Q  6 aagattggcataagatagctcacattcctgaatttaaattggaatc------tgatgtaaaaccaacatttcgtggtaa---aatttaatgaatc 91  Q
    |||||||| |||||||||||||||| |||||| || ||||||||||      ||||| ||||||||||||| |||||||   |||||||||||||    
T  13375832 aagattgggataagatagctcacatacctgaagttgaattggaatctaaatttgatgcaaaaccaacattttgtggtaatttaatttaatgaatc 13375738  T

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Target: scaffold0133 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 10598 - 10558
Alignment:
Q  6 aagattggcataagatagctcacattcctgaatttaaattg 46  Q
    |||||||||||||||||||||||||||||||| || |||||    
T  10598 aagattggcataagatagctcacattcctgaagttgaattg 10558  T

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Target: scaffold0133; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 15895 - 15855
Alignment:
Q  6 aagattggcataagatagctcacattcctgaatttaaattg 46  Q
    ||||||||||||||||||||||||||||| ||||| |||||    
T  15895 aagattggcataagatagctcacattcctcaatttcaattg 15855  T

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Target: scaffold0133; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 6250 - 6222
Alignment:
Q  6 aagattggcataagatagctcacattcct 34  Q
    |||||||||||||||||||||||||||||    
T  6250 aagattggcataagatagctcacattcct 6222  T

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Target: scaffold0256 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 6909 - 6881
Alignment:
Q  6 aagattggcataagatagctcacattcct 34  Q
    |||||||||||||||||||||||||||||    
T  6909 aagattggcataagatagctcacattcct 6881  T

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