View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_299 (Length: 235)

Name: NF10104A_low_299
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_299
NF10104A_low_299
[»] chr6 (16 HSPs)
chr6 (6-131)||(17095606-17095739)
chr6 (42-225)||(17066986-17067177)
chr6 (6-199)||(16870346-16870529)
chr6 (129-199)||(16558631-16558701)
chr6 (79-199)||(16655604-16655728)
chr6 (121-197)||(16984995-16985068)
chr6 (13-78)||(16985125-16985190)
chr6 (158-199)||(16784821-16784862)
chr6 (6-46)||(16794920-16794960)
chr6 (6-50)||(16841534-16841578)
chr6 (6-57)||(16975728-16975779)
chr6 (6-41)||(17067196-17067231)
chr6 (6-36)||(16655782-16655812)
chr6 (8-36)||(16558494-16558522)
chr6 (6-34)||(16778898-16778926)
chr6 (6-34)||(16784994-16785022)
[»] chr3 (2 HSPs)
chr3 (6-212)||(7055690-7055894)
chr3 (6-46)||(38941762-38941802)
[»] chr8 (1 HSPs)
chr8 (6-91)||(13375738-13375832)
[»] scaffold0133 (4 HSPs)
scaffold0133 (130-184)||(6069-6120)
scaffold0133 (6-46)||(10558-10598)
scaffold0133 (6-46)||(15855-15895)
scaffold0133 (6-34)||(6222-6250)
[»] scaffold0256 (1 HSPs)
scaffold0256 (6-34)||(6881-6909)


Alignment Details
Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 17095739 - 17095606
Alignment:
Q  6 aagattggcataagatagctcacattcctgaatttaaattggaatctgatgtaaaaccaacatttcgtggtaa--------aatttaatgaatctcttta 97  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| |||||| |||||||||||||||||||||        |||||||||||||||||||    
T  17095739 aagattggcattagatagctcacattcctgaatttgaattggaaactgatgcaaaaccaacatttcgtggtaatttaatttaatttaatgaatctcttta 17095640  T
Q  98 cttgttcatttatcttttgtcttactatatcaaa 131  Q
    ||||||||||||||||||||||||||||||||||    
T  17095639 cttgttcatttatcttttgtcttactatatcaaa 17095606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 42 - 225
Target Start/End: Complemental strand, 17067177 - 17066986
Alignment:
Q  42 aattggaatctgatgtaaaaccaacatttcgtggtaa---aatttaatgaatctctttacttgtt--catttatcttttgtcttactata---tcaaatt 133  Q
    ||||| ||||||||| |||||||||| || |||||||   ||||||| ||||||||| | || ||  | ||| | |||||||||||||||   | |||||    
T  17067177 aattgcaatctgatgcaaaaccaacaatttgtggtaatttaatttaacgaatctcttaattttttttcctttcttttttgtcttactatagaataaaatt 17067078  T
Q  134 atatagtgtgattttagacttattatattgaacaatgtgtgctgagaatatcaaatcagcatggaatacggggaagcaattctggcaccgcc 225  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||  |||||||| ||||| ||||||||    
T  17067077 atatactgtgattttagacttattatattgaacaatgtgtgcagagaatattaaatcagcatggaattgggggaagcgattcttgcaccgcc 17066986  T

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Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 16870346 - 16870529
Alignment:
Q  6 aagattggcataagatagctcacattcctgaatttaaattggaatctgatgtaaaaccaacatttcgtggtaaaatttaatgaatctctttacttgttca 105  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||  ||||||||||||| |||||  ||||||||       || |    |||     
T  16870346 aagattggcataagatagctcacattcctgaattttatttggaatctgataaaaaaccaacattttgtggt--aatttaat-------ttga----ttcc 16870432  T
Q  106 tttatcttttgtcttact---atatcaaattatatagtgtgattttagacttattatattgaacaatgtgtgctgagaatatcaaatcagcatggaa 199  Q
    ||| |||||||| |||||   |||| |||||| || |||||||| |||||||||||||||||||||||||||| || ||||||| ||||||||||||    
T  16870433 tttgtcttttgtgttactataatataaaattagatggtgtgattatagacttattatattgaacaatgtgtgcagataatatcatatcagcatggaa 16870529  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 199
Target Start/End: Original strand, 16558631 - 16558701
Alignment:
Q  129 aaattatatagtgtgattttagacttattatattgaacaatgtgtgctgagaatatcaaatcagcatggaa 199  Q
    |||||| || |||||||| |||||||||||||||||||||||||||| || ||||||| ||||||||||||    
T  16558631 aaattagatggtgtgattatagacttattatattgaacaatgtgtgcagataatatcatatcagcatggaa 16558701  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 199
Target Start/End: Complemental strand, 16655728 - 16655604
Alignment:
Q  79 aatttaatgaatctctttacttg-ttcatttatcttttgtcttactata---tcaaattatatagtgtgattttagacttattatattgaacaatgtgtg 174  Q
    ||||||| ||||| ||||| ||| ||| ||| |||||||| ||||||||   |||||| | || |||||||| |||||||||||||||||||||||||||    
T  16655728 aatttaacgaatccctttatttgattcctttgtcttttgtgttactataatatcaaatcagatggtgtgattatagacttattatattgaacaatgtgtg 16655629  T
Q  175 ctgagaatatcaaatcagcatggaa 199  Q
    | || ||||||  ||||||||||||    
T  16655628 cagataatatcttatcagcatggaa 16655604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 197
Target Start/End: Complemental strand, 16985068 - 16984995
Alignment:
Q  121 actatatcaaattatatagtgtgattttagacttattatattgaacaatgtgtgctgagaatatcaaatcagcatgg 197  Q
    ||||||||||||||||| ||||||||||||||   |||||||||||||| ||||| |||||||||| ||||||||||    
T  16985068 actatatcaaattatatggtgtgattttagac---ttatattgaacaatatgtgcagagaatatcatatcagcatgg 16984995  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 16985190 - 16985125
Alignment:
Q  13 gcataagatagctcacattcctgaatttaaattggaatctgatgtaaaaccaacatttcgtggtaa 78  Q
    |||||||||||||||||||||||||||| | || ||||||| || |||||||||||| | ||||||    
T  16985190 gcataagatagctcacattcctgaattttattttgaatctggtgcaaaaccaacattccctggtaa 16985125  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 158 - 199
Target Start/End: Complemental strand, 16784862 - 16784821
Alignment:
Q  158 atattgaacaatgtgtgctgagaatatcaaatcagcatggaa 199  Q
    ||||| |||||||||||| |||||||||||||||||||||||    
T  16784862 atattaaacaatgtgtgcagagaatatcaaatcagcatggaa 16784821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 16794960 - 16794920
Alignment:
Q  6 aagattggcataagatagctcacattcctgaatttaaattg 46  Q
    ||||||||||||||||||||||| ||||||||||| |||||    
T  16794960 aagattggcataagatagctcacgttcctgaatttgaattg 16794920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 16841578 - 16841534
Alignment:
Q  6 aagattggcataagatagctcacattcctgaatttaaattggaat 50  Q
    |||||||||||||||||||||||||||||  ||| ||||||||||    
T  16841578 aagattggcataagatagctcacattcctagattgaaattggaat 16841534  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 16975728 - 16975779
Alignment:
Q  6 aagattggcataagatagctcacattcctgaatttaaattggaatctgatgt 57  Q
    |||||||| |||||| ||||||  ||||| ||||||||||||||||||||||    
T  16975728 aagattggtataagacagctcatgttcctaaatttaaattggaatctgatgt 16975779  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 41
Target Start/End: Complemental strand, 17067231 - 17067196
Alignment:
Q  6 aagattggcataagatagctcacattcctgaattta 41  Q
    ||||||||||||| ||||||||||||||||||||||    
T  17067231 aagattggcataaaatagctcacattcctgaattta 17067196  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 16655812 - 16655782
Alignment:
Q  6 aagattggcataagatagctcacattcctga 36  Q
    |||||||||||||||||||||||||||||||    
T  16655812 aagattggcataagatagctcacattcctga 16655782  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 36
Target Start/End: Original strand, 16558494 - 16558522
Alignment:
Q  8 gattggcataagatagctcacattcctga 36  Q
    |||||||||||||||||||||||||||||    
T  16558494 gattggcataagatagctcacattcctga 16558522  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 16778926 - 16778898
Alignment:
Q  6 aagattggcataagatagctcacattcct 34  Q
    |||||||||||||||||||||||||||||    
T  16778926 aagattggcataagatagctcacattcct 16778898  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 16785022 - 16784994
Alignment:
Q  6 aagattggcataagatagctcacattcct 34  Q
    |||||||||||||||||||||||||||||    
T  16785022 aagattggcataagatagctcacattcct 16784994  T

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Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 6 - 212
Target Start/End: Original strand, 7055690 - 7055894
Alignment:
Q  6 aagattggcataagatagctcacattcctgaatttaaattggaatctgatgtaaaaccaacatttcgtggtaa---aatttaatgaatctcttta-cttg 101  Q
    |||||||||||||||||||||||||||| | ||| | |||||||||||||| |||| || ||||| |||||||   |||||||| |||| |||||  ||     
T  7055690 aagattggcataagatagctcacattccggcattgatattggaatctgatgcaaaaacatcattttgtggtaatttaatttaatcaatccctttatatta 7055789  T
Q  102 ttcatttatcttttgtcttactatatcaaattatatagtgtgattttagacttattatattgaacaatgtgtgctgagaatatcaaatcagcatggaata 201  Q
    ||| ||| |||||| |||||||||||| |   ||||  | || || |||||   ||||||||||||||| |||| |||||||||| ||||||||| ||||    
T  7055790 ttcctttctcttttttcttactatatcca---atatgctatggttctagac---ttatattgaacaatgggtgcagagaatatcatatcagcatgcaata 7055883  T
Q  202 cggggaagcaa 212  Q
    | |||||||||    
T  7055884 cagggaagcaa 7055894  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 38941762 - 38941802
Alignment:
Q  6 aagattggcataagatagctcacattcctgaatttaaattg 46  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  38941762 aagattggcataagatagctcacattcctgaatttgaattg 38941802  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 13375832 - 13375738
Alignment:
Q  6 aagattggcataagatagctcacattcctgaatttaaattggaatc------tgatgtaaaaccaacatttcgtggtaa---aatttaatgaatc 91  Q
    |||||||| |||||||||||||||| |||||| || ||||||||||      ||||| ||||||||||||| |||||||   |||||||||||||    
T  13375832 aagattgggataagatagctcacatacctgaagttgaattggaatctaaatttgatgcaaaaccaacattttgtggtaatttaatttaatgaatc 13375738  T

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Target: scaffold0133 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 6120 - 6069
Alignment:
Q  130 aattatatagtgtgattttagacttattatattgaacaatgtgtgctgagaatat 184  Q
    |||||||| ||||||||||||||||||   |||||||||||||||| ||||||||    
T  6120 aattatatggtgtgattttagacttat---attgaacaatgtgtgcagagaatat 6069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 10598 - 10558
Alignment:
Q  6 aagattggcataagatagctcacattcctgaatttaaattg 46  Q
    |||||||||||||||||||||||||||||||| || |||||    
T  10598 aagattggcataagatagctcacattcctgaagttgaattg 10558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 46
Target Start/End: Complemental strand, 15895 - 15855
Alignment:
Q  6 aagattggcataagatagctcacattcctgaatttaaattg 46  Q
    ||||||||||||||||||||||||||||| ||||| |||||    
T  15895 aagattggcataagatagctcacattcctcaatttcaattg 15855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0133; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 6250 - 6222
Alignment:
Q  6 aagattggcataagatagctcacattcct 34  Q
    |||||||||||||||||||||||||||||    
T  6250 aagattggcataagatagctcacattcct 6222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Complemental strand, 6909 - 6881
Alignment:
Q  6 aagattggcataagatagctcacattcct 34  Q
    |||||||||||||||||||||||||||||    
T  6909 aagattggcataagatagctcacattcct 6881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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