View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10104A_low_3 (Length: 626)
Name: NF10104A_low_3
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 10 - 606
Target Start/End: Complemental strand, 37821846 - 37821240
Alignment:
| Q |
10 |
aagaatattgaagttatgtaaagattccaggacttaacaagattctatacccaaccttgtattaagattttctatatctgtagctttaattttgcaggca |
109 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37821846 |
aagaatatggaagttatgtaaagattccaggacttaacaagattctatacccaaccttgtattaagattttctatatctgtagctttaattttgcaggca |
37821747 |
T |
|
| Q |
110 |
agtttaaattatttgatctggggctgcattataaaatgtgcaattgattgtgtgaagatgtcgttgaattggtgttgcatcttaacttctgtgcacttga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37821746 |
agtttaaattatttgatctggggctgcattataaaatgtgcaattgattgtgtgaagatgtcgttgaattggtgttgcatcttaacttctgtgcacttga |
37821647 |
T |
|
| Q |
210 |
gactgacattatgcatgttatacaacaactatctgtctgtacctagttactgcgtgtcaatttagttcagttggtgatttagcatgtgctataatactgg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37821646 |
gactgacattatgcatgttatacaacaactatctgtctgtacctagttactgcgtgtcaatttagttcagttggtgatttagcatgtgctataatactgg |
37821547 |
T |
|
| Q |
310 |
ccaaaactggccatagtactgttctttatttgattattattttgataatgtaatgttttttaacggttgatactgtaatactattcatctcttacatata |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37821546 |
ccaaaactggccatagtactgttctttatttgattattattttgataatgtaatgttttttaacggttgatactgtaatactattcatctcttacatata |
37821447 |
T |
|
| Q |
410 |
taatt------------atcatacataactatagcattttattaatgatatatgttaagagcaattccaaaactcatggtaatgtgatgtgactgctggc |
497 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37821446 |
taattatcacaccctttatcatacataactatagcattttaataatg--atatgttaagagcaattccaaaactcatggtaatgtgatgtgactgctggc |
37821349 |
T |
|
| Q |
498 |
ctcacaatttcttccgtagtactcgtatataaaagtccacttagtgggcattccactaaccactctacaaagttttaaatttttggtgtcattggtctcc |
597 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37821348 |
ctcacaatttcttccgtagtactcgtatataaaagtccacttagtggccattccactaaccactctacaaagttttaaatttttggtgtcattggtctcc |
37821249 |
T |
|
| Q |
598 |
tatcatttc |
606 |
Q |
| |
|
||||||||| |
|
|
| T |
37821248 |
tatcatttc |
37821240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University