View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_300 (Length: 235)
Name: NF10104A_low_300
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_300 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 39245619 - 39245393
Alignment:
| Q |
1 |
aaaaactttccttttacaattggtgggtgttctacattataattggagccattttagccgaaacagtattagtctacatacaagacaatgttggttttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39245619 |
aaaaactttccttttacaattggtgggtgttctacattataattggagccattttagccgaaacagtattagtctacatacaagacaatgttggttttgc |
39245520 |
T |
|
| Q |
101 |
ccttggttatgggattccaaccatattgcttgttttttcaacattggtgtttttgtttggaacaccaatttatagacataaattgccttcaggaagtcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
39245519 |
ccttggttatgggattccaaccatattgcttgttttttcaacattggtgtttttgtttggaacaccaatttatagacataaattgccttctggaagtcct |
39245420 |
T |
|
| Q |
201 |
ttaactagaatggttcaagtctatgtt |
227 |
Q |
| |
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|||||||||||||||||||||| |||| |
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| T |
39245419 |
ttaactagaatggttcaagtctttgtt |
39245393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 39251622 - 39251420
Alignment:
| Q |
1 |
aaaaactttccttttacaattggtgggtgttctacattataattggagccattttagccgaaacagtattagtctacatacaagacaatgttggttttgc |
100 |
Q |
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||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
39251622 |
aaaaactttcctttttcaattggtgggtgttctgcattataactggaggcattttagccgaaacaggattagtctacatacaagacaatgttggttt-gc |
39251524 |
T |
|
| Q |
101 |
ccttggttatgggattccaaccatattgcttgttttttcaacattggtgtttttgtttggaacaccaatttatagacataaattgccttcaggaagtcct |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||| ||||| ||| |
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| T |
39251523 |
ccttggttatgggattccaaccatcttgcttgttttttcaacattggtgtttttgtttggaacaccactttatagacatagattaccttctggaagccct |
39251424 |
T |
|
| Q |
201 |
ttaa |
204 |
Q |
| |
|
|||| |
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|
| T |
39251423 |
ttaa |
39251420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 39261215 - 39260989
Alignment:
| Q |
1 |
aaaaactttccttttacaattggtgggtgttctacattataattggagccattttagccgaaacagtattagtctacatacaagacaatgttggttttgc |
100 |
Q |
| |
|
|||||||||| || ||||||||||||||||| |||||| |||||||| |||||| ||| ||||| |||| || |||||||||||||||||||||||||| |
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| T |
39261215 |
aaaaactttcattctacaattggtgggtgttttacattttaattggaaccatttcagctcaaacaatattggtttacatacaagacaatgttggttttgc |
39261116 |
T |
|
| Q |
101 |
ccttggttatgggattccaaccatattgcttgttttttcaacattggtgtttttgtttggaacaccaatttatagacataaattgccttcaggaagtcct |
200 |
Q |
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|||||| ||||||||||||||||||||||||||| |||| | |||||||||| |||| || || ||| ||||||| |||| ||| ||||| ||||||||| |
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| T |
39261115 |
ccttggctatgggattccaaccatattgcttgttgtttccatattggtgtttgtgttaggtactccactttataggcatagattaccttctggaagtcct |
39261016 |
T |
|
| Q |
201 |
ttaactagaatggttcaagtctatgtt |
227 |
Q |
| |
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|||||||||||||||||||||| |||| |
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|
| T |
39261015 |
ttaactagaatggttcaagtctttgtt |
39260989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 222
Target Start/End: Complemental strand, 39239722 - 39239575
Alignment:
| Q |
75 |
tacatacaagacaatgttggttttgcccttggttatgggattccaaccatattgcttgttttttcaacattggtgtttttgtttggaacaccaatttata |
174 |
Q |
| |
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||||||||||||||| |||||| | ||||| ||||| |||||||||| |||| ||||||| |||||||||||| || ||||||||| ||||| |
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| T |
39239722 |
tacatacaagacaatattggttgggaacttggatatggccttccaaccattggccttgcattttcaatattggtgtttttattaggaacaccatattata |
39239623 |
T |
|
| Q |
175 |
gacataaattgccttcaggaagtcctttaactagaatggttcaagtct |
222 |
Q |
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|||| ||||||||| |||| || ||| |||| || ||| ||||||||| |
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| T |
39239622 |
gacacaaattgcctccaggcagccctataacaaggatgcttcaagtct |
39239575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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