View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_302 (Length: 235)
Name: NF10104A_low_302
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_302 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 4336897 - 4336689
Alignment:
| Q |
7 |
tttcgtgttgaaagctaaccaatttgggtaatcatcactggggagcaaaaagctaccacacccatcgacagtcacattctgtagaaagtggaaatatttg |
106 |
Q |
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| T |
4336897 |
tttcgagttgaaagctaaccaatttgggtaatcatcactggggagcaaaaagctaccacacccatcgacagtcacattctgtagaaagtggaaatatttg |
4336798 |
T |
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| Q |
107 |
atttaaaagcatattaatatcaaaataatttgttccaaaattaaatatataacattcctcaaaagataattagtattttgataaataaaaattacaacaa |
206 |
Q |
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| T |
4336797 |
atttaaaaccatattaatatcaaaataatttgttccaaaattaaatatataacattcctcaaaagataattagtattttgataaataaaaattacaacaa |
4336698 |
T |
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| Q |
207 |
cgatatttg |
215 |
Q |
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|||||||| |
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| T |
4336697 |
tgatatttg |
4336689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 4346345 - 4346200
Alignment:
| Q |
13 |
gttgaaagctaaccaatttgggtaatcatcactggggagcaaaaagctaccacacccatcgacagtcacattctgtagaaagtggaaatatttgatttaa |
112 |
Q |
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|||||||| | ||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||||| |||||||| ||||| |||||||||||||||| |
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| T |
4346345 |
gttgaaagttgaccaatttgggtaattatcaccggggagcaaaaaactaccacgcccatcgacagtcaaattctgtaaaaagtagaaatatttgatttaa |
4346246 |
T |
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| Q |
113 |
aagcatattaatatcaaaataatttgttccaaaattaaatatataa |
158 |
Q |
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| T |
4346245 |
caatatattaatatcacaatcatttattcaaaaattaaatatataa |
4346200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 4362541 - 4362391
Alignment:
| Q |
13 |
gttgaaagctaaccaatttgggtaatcatcactggggagcaaaaagctaccacacccatcgacagtcacattctgtagaaagtggaaatatttgatttaa |
112 |
Q |
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| T |
4362541 |
gttgaaacttaaccaatttgggtaatcatcaccagggagcaaaaaactaccacgcccatcgacagtcaaattctgtaaaaagtggaaatatttgatttaa |
4362442 |
T |
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| Q |
113 |
aagcatattaatatcaaaataatttgttccaaaattaaatatataacattc |
163 |
Q |
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| T |
4362441 |
cgatatattaacatcacaatcatttattcaaaaattaaatatataatattc |
4362391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 4122950 - 4123040
Alignment:
| Q |
13 |
gttgaaagctaaccaatttgggtaatcatcactggggagcaaaaagctaccacacccatcgacagtcacattctgt-agaaagtggaaata |
102 |
Q |
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||||||| ||||||||||||||||| ||||| ||||||||||| ||||||| ||| |||||||||| ||||||| | |||||||||||| |
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| T |
4122950 |
gttgaaacttaaccaatttgggtaattatcacaggggagcaaaacactaccacccccgtcgacagtcaaattctgtaaaaaagtggaaata |
4123040 |
T |
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