View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_304 (Length: 234)
Name: NF10104A_low_304
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_304 |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 34 - 211
Target Start/End: Original strand, 32724253 - 32724430
Alignment:
| Q |
34 |
tatagagagatatcaaagaggggatagagattcatgagtataaattttggttccctatattaacttccttctgttttctttcaataaagaattttcactt |
133 |
Q |
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| T |
32724253 |
tatagagagatatcagagaggggatagagattcatgagtataaattttggttccctatattaactttcttctggtttctttcaataaagaattttcactt |
32724352 |
T |
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| Q |
134 |
taactattatttgttggtgatacaccttcaacattgatggtttacatcgtcaatttctaattgaacggacaacagtca |
211 |
Q |
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| T |
32724353 |
tcactattatttgttggtgatacaccttcaacattgatggtttacattgccaatttctaattgaagggacaaaagtca |
32724430 |
T |
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Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 59 - 197
Target Start/End: Original strand, 4001641 - 4001789
Alignment:
| Q |
59 |
agagattcatgagtataaattttggttccctatattaacttccttctgttttctttcaa---------taaagaattttcactttaactattatttgttg |
149 |
Q |
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| T |
4001641 |
agagattcatgactataaattttagttctctatgttaacatccttctggtttctttcaacttttttatttaagaattttcacttttactattatttgttg |
4001740 |
T |
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| Q |
150 |
gtgatacaccttcaacattgatggtttaca-tcgtcaatttctaattga |
197 |
Q |
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| T |
4001741 |
gttatacaccttcaatattgatggtttacatttgtcagtttctaattga |
4001789 |
T |
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