View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_305 (Length: 233)
Name: NF10104A_low_305
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_305 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 43921708 - 43921936
Alignment:
| Q |
5 |
gagaaacaatatgagattgccatggtgttgatggtcaatcaccaaacacctgaggtgttaactcagtggtaagaacttcgccgtataagctcagctagtt |
104 |
Q |
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| T |
43921708 |
gagaaacaatatgagattgccatggtgttgatggtcaatcaccagacacctgaggtgttaactcagtggtaagaacttagccgtataagctcagatactt |
43921807 |
T |
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| Q |
105 |
agttcaaacttcaaatccctcggagacggtattagtgtaaatttgattaataaaaatctccctcttccccaattaaacaaaaagtgcagcactgagataa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43921808 |
agttcaaacttcaaatccctcggagacggtattagtgtcaatttgattaataaaaatctccctcttccccaattaaacaaaaagtgcagcactgagataa |
43921907 |
T |
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| Q |
205 |
atcgataatcatgtacaagaatttcgtat |
233 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
43921908 |
atcgataatcatgtacaagaatttcgtat |
43921936 |
T |
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