View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_307 (Length: 232)

Name: NF10104A_low_307
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_307
NF10104A_low_307
[»] chr7 (1 HSPs)
chr7 (7-232)||(8694409-8694628)
[»] chr3 (15 HSPs)
chr3 (13-232)||(28130119-28130338)
chr3 (8-232)||(28079573-28079797)
chr3 (23-232)||(27998747-27998956)
chr3 (23-232)||(28144047-28144256)
chr3 (13-227)||(11408968-11409179)
chr3 (8-232)||(28047586-28047807)
chr3 (54-231)||(27909968-27910145)
chr3 (13-231)||(17749055-17749270)
chr3 (13-231)||(19050375-19050590)
chr3 (15-232)||(28178196-28178413)
chr3 (136-232)||(27963037-27963133)
chr3 (13-232)||(28472041-28472257)
chr3 (13-232)||(28492082-28492298)
chr3 (13-232)||(28513063-28513279)
chr3 (103-230)||(27464176-27464303)
[»] chr4 (4 HSPs)
chr4 (54-232)||(9329731-9329909)
chr4 (54-232)||(9383514-9383692)
chr4 (13-231)||(9329987-9330202)
chr4 (13-231)||(9383770-9383985)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 8694409 - 8694628
Alignment:
Q  7 attatcatcatcaactatttcacctctcgattcctccccttttcttacatcaattattatgttttcaagaagctcgcaatcaattattttcagtgtctcc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  8694409 attatcatcatcaactatttcacctctcgattcctccccttttcttacatcaattattatgttttcaagaagc--gcaatcaattattttcagtgtctcc 8694506  T
Q  107 aacaacactaggcttcgagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgc 206  Q
    ||||||| |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8694507 aacaacaataggcttcgagcagttgac----gaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgc 8694602  T
Q  207 acttaaataagctttgcaaatgttta 232  Q
    ||||||||||||||||||||||||||    
T  8694603 acttaaataagctttgcaaatgttta 8694628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 28130338 - 28130119
Alignment:
Q  13 atcatcaactatttcacctctcgattcctccccttttcttacatcaattattatgttttcaagaagctcgcaatcaattattttcagtgtctccaacaac 112  Q
    |||||| |||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||| || |||||||||| ||| ||||||||||||    
T  28130338 atcatcgactatttcacctctcgattcctgcccttttctttcatctattattatgttttcaagaagctcacagtcaattatttccagcgtctccaacaac 28130239  T
Q  113 actaggcttcgagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaa 212  Q
    ||||||||   ||||||||||||||| |||||||||||||||||||| |||| ||||||  |||| ||||||||||||||||||||||||||||||||||    
T  28130238 actaggctaacagcagttgacagttgtaatagggagatcaacatcgggcatcctttcaataacacactctttagattgaataggtttaggttgcacttaa 28130139  T
Q  213 ataagctttgcaaatgttta 232  Q
    ||||||||| ||||||||||    
T  28130138 ataagcttttcaaatgttta 28130119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 28079797 - 28079573
Alignment:
Q  8 ttatcatcatcaactatttcacctctcgattcctccccttttcttacatcaattattatgttttcaagaagctcgcaatcaattattttcagtgtctcca 107  Q
    |||| ||||||||||||||||||||| ||||||| |||||||||| |||| ||||||||||||||||||  ||| || ||   ||||| || | ||||||    
T  28079797 ttattatcatcaactatttcacctcttgattccttcccttttctttcatctattattatgttttcaagaccctcacagtcctgtatttccaatctctcca 28079698  T
Q  108 acaacactaggcttcgagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgca 207  Q
    |||||||||||||   |||||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||||||||||||||||||||||| |||||    
T  28079697 acaacactaggctaacagcagttgacagttgaaatagggagatcaacatcgggcatcctttcaatgacacactctttagattgaataggtttagtttgca 28079598  T
Q  208 cttaaataagctttgcaaatgttta 232  Q
    |||||||||||||| ||||||||||    
T  28079597 cttaaataagcttttcaaatgttta 28079573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 23 - 232
Target Start/End: Complemental strand, 27998956 - 27998747
Alignment:
Q  23 atttcacctctcgattcctccccttttcttacatcaattattatgttttcaagaagctcgcaatcaattattttcagtgtctccaacaacactaggcttc 122  Q
    ||||||||||| ||||||| |||||||||| |||||||||||||||||||||||  ||| || ||  |||||  || | |||||||||||||||||||      
T  27998956 atttcacctcttgattccttcccttttctttcatcaattattatgttttcaagaccctcacagtcctttattaccaatctctccaacaacactaggctaa 27998857  T
Q  123 gagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaaataagctttg 222  Q
     |||||||||||||||||||||||||||||||||||| |||| || || | |||||||||||||||||||||||||||| |||||||||||||||||||     
T  27998856 cagcagttgacagttgaaatagggagatcaacatcgggcatccttccagcaacacgctctttagattgaataggtttagtttgcacttaaataagctttt 27998757  T
Q  223 caaatgttta 232  Q
    ||||||||||    
T  27998756 caaatgttta 27998747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 23 - 232
Target Start/End: Complemental strand, 28144256 - 28144047
Alignment:
Q  23 atttcacctctcgattcctccccttttcttacatcaattattatgttttcaagaagctcgcaatcaattattttcagtgtctccaacaacactaggcttc 122  Q
    ||||||||||| ||||||| |||||||||| || | ||||||||||||||||||  ||| |||||  ||||||||| | |||||||||||||||||||      
T  28144256 atttcacctcttgattccttcccttttctttcacctattattatgttttcaagaccctcacaatcctttattttcaatctctccaacaacactaggctaa 28144157  T
Q  123 gagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaaataagctttg 222  Q
     | |||||||||||||||||||||||||||||||||| |||| |||||| ||||  ||||||||||||||||||||||| |||||||||||||||||||     
T  28144156 caacagttgacagttgaaatagggagatcaacatcgggcatcctttcaatgacaatctctttagattgaataggtttagtttgcacttaaataagctttt 28144057  T
Q  223 caaatgttta 232  Q
    ||||||||||    
T  28144056 caaatgttta 28144047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 227
Target Start/End: Complemental strand, 11409179 - 11408968
Alignment:
Q  13 atcatcaactatttcacctctcgattcctccccttttcttacatcaattattatgttttcaagaagctcgcaatcaattattttcagtgtctccaacaac 112  Q
    |||||||||||||||||||||| |||||||| | || ||| ||||   |||||||| |||||||    | || ||| |||||| || | |||||||||||    
T  11409179 atcatcaactatttcacctctcaattcctcctcgttcctttcatc---tattatgtattcaagacatccacagtcatttatttccaatctctccaacaac 11409083  T
Q  113 actaggcttcgagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaa 212  Q
    ||||||||   |||||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  11409082 actaggctaacagcagttgacagttgaaacagggagatcaacatcgggcatcttttcaacaacacgctctttagattgaataggtttaggttgcacttaa 11408983  T
Q  213 ataagctttgcaaat 227  Q
    ||||||||| |||||    
T  11408982 ataagcttttcaaat 11408968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 8 - 232
Target Start/End: Complemental strand, 28047807 - 28047586
Alignment:
Q  8 ttatcatcatcaactatttcacctctcgattcctccccttttcttacatcaattattatgttttcaagaagctcgcaatcaattattttcagtgtctcca 107  Q
    |||| ||||||||||||||||||||||||||||| | |||||||| ||||   |||||||| |||||||    | || |||  ||||| || | ||||||    
T  28047807 ttattatcatcaactatttcacctctcgattcctgctcttttctttcatc---tattatgtattcaagacatccacagtcatctatttccaatctctcca 28047711  T
Q  108 acaacactaggcttcgagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgca 207  Q
    || ||||||||||   |||||||||||||||||||||||||||||||||||| |||| || |||||| || |||||||||||||||||||||||||||||    
T  28047710 acgacactaggctaacagcagttgacagttgaaatagggagatcaacatcgggcatccttccaacgatacactctttagattgaataggtttaggttgca 28047611  T
Q  208 cttaaataagctttgcaaatgttta 232  Q
    |||||||||||||| ||||||||||    
T  28047610 cttaaataagcttttcaaatgttta 28047586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 54 - 231
Target Start/End: Complemental strand, 27910145 - 27909968
Alignment:
Q  54 catcaattattatgttttcaagaagctcgcaatcaattattttcagtgtctccaacaacactaggcttcgagcagttgacagttgaaatagggagatcaa 153  Q
    |||| ||||||||||||||||||  ||| || |||  ||||| || | |||||||||||||||||||   ||||||||||||||||||||||| ||||||    
T  27910145 catctattattatgttttcaagaccctcacagtcatatatttccaatctctccaacaacactaggctaacagcagttgacagttgaaatagggcgatcaa 27910046  T
Q  154 catcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaaataagctttgcaaatgttt 231  Q
    |||||| ||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  27910045 catcgggcatctttccaacgacacactctttagattgaataggtttagtttgcacttaaataagcttttcaaatgttt 27909968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 17749055 - 17749270
Alignment:
Q  13 atcatcaactatttcacctctcgattcctccccttttcttacatcaattattatgttttcaagaagctcgcaatcaattattttcagtgtctccaacaac 112  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||   |||||||| |||||||    | || ||   ||||| || | |||||||||||    
T  17749055 atcatcaactatttcacctcttgattcctccccttttctttcatc---tattatgtattcaagacatccacagtcctctatttccaatctctccaacaac 17749151  T
Q  113 actaggcttcgagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaa 212  Q
    ||||||||   |||||||||||| ||||||| ||| ||||||||||| ||| ||| || |||||| ||||||||||||||||||||||||||||||||||    
T  17749152 actaggctaacagcagttgacagatgaaataaggacatcaacatcgggcatttttccagcgacacactctttagattgaataggtttaggttgcacttaa 17749251  T
Q  213 ataagctttgcaaatgttt 231  Q
    |||||||||||||||||||    
T  17749252 ataagctttgcaaatgttt 17749270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 19050375 - 19050590
Alignment:
Q  13 atcatcaactatttcacctctcgattcctccccttttcttacatcaattattatgttttcaagaagctcgcaatcaattattttcagtgtctccaacaac 112  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||   |||||||| |||||||    | || ||   ||||| || | |||||||||||    
T  19050375 atcatcaactatttcacctcttgattcctccccttttctttcatc---tattatgtattcaagacatccacagtcctctatttccaatctctccaacaac 19050471  T
Q  113 actaggcttcgagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaa 212  Q
    ||||||||   |||||||||||| ||||||| ||| ||||||||||| ||| ||| || |||||| ||||||||||||||||||||||||||||||||||    
T  19050472 actaggctaacagcagttgacagatgaaataaggacatcaacatcgggcatttttccagcgacacactctttagattgaataggtttaggttgcacttaa 19050571  T
Q  213 ataagctttgcaaatgttt 231  Q
    |||||||||||||||||||    
T  19050572 ataagctttgcaaatgttt 19050590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 15 - 232
Target Start/End: Complemental strand, 28178413 - 28178196
Alignment:
Q  15 catcaactatttcacctctcgattcctccccttttcttacatcaattattatgttttcaagaagctcgcaatcaattattttcagtgtctccaacaacac 114  Q
    |||||| ||||||||||||| |||| ||||| ||| || || | |||||||||||||||||  |||| ||||||||||||| |||| |||||||||||||    
T  28178413 catcaattatttcacctctcaattcgtccccgtttttttcaactattattatgttttcaaggcgctcacaatcaattatttccagtttctccaacaacac 28178314  T
Q  115 taggcttcgagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaaat 214  Q
    ||||||   | |||||||||||||||||||||| ||||||||||| |||  || ||| || |  |||||||||||| | |||||||||||||||||||||    
T  28178313 taggctaacaacagttgacagttgaaatagggatatcaacatcgggcattcttccaatgaaagactctttagattgcagaggtttaggttgcacttaaat 28178214  T
Q  215 aagctttgcaaatgttta 232  Q
    |||||||  |||||||||    
T  28178213 aagctttttaaatgttta 28178196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 136 - 232
Target Start/End: Complemental strand, 27963133 - 27963037
Alignment:
Q  136 ttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaaataagctttgcaaatgttta 232  Q
    ||||||| |||||||||||||||| |||| || ||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27963133 ttgaaatggggagatcaacatcgggcatccttccaatgacacactctttagattgaataggtttaggttgcacttaaataagcttttcaaatgttta 27963037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 28472041 - 28472257
Alignment:
Q  13 atcatcaactatttcacctctcgattcctccccttttcttacatcaattattatgttttcaagaagctcgcaatcaattattttcagtgtctccaacaac 112  Q
    |||||||||||||| || ||||||||||| || ||||||| ||||   |||||||| |||||||  ||| || |||  ||||| || | |||||||||||    
T  28472041 atcatcaactattttacttctcgattcctgccattttctttcatc---tattatgtattcaagaccctcacagtcatatatttccaatctctccaacaac 28472137  T
Q  113 actaggcttcgagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaa 212  Q
    |  ||||| | ||||||||||| |||||||| ||||||||||||||| |||| |  ||| || |  |||||||||||| | ||||||| |||||||| ||    
T  28472138 atcaggctacaagcagttgacatttgaaatatggagatcaacatcgggcatcgtaccaatgaaagactctttagattgcagaggtttatgttgcactcaa 28472237  T
Q  213 ataagctttgcaaatgttta 232  Q
    ||||| ||| ||||||||||    
T  28472238 ataagattttcaaatgttta 28472257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 28492082 - 28492298
Alignment:
Q  13 atcatcaactatttcacctctcgattcctccccttttcttacatcaattattatgttttcaagaagctcgcaatcaattattttcagtgtctccaacaac 112  Q
    |||||||||||||| || ||||||||||| || ||||||| ||||   |||||||| |||||||  ||| || |||  ||||| || | |||||||||||    
T  28492082 atcatcaactattttacttctcgattcctgccattttctttcatc---tattatgtattcaagaccctcacagtcatatatttccaatctctccaacaac 28492178  T
Q  113 actaggcttcgagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaa 212  Q
    |  ||||| | ||||||||||| |||||||| ||||||||||||||| |||| |  ||| || |  |||||||||||| | ||||||| |||||||| ||    
T  28492179 atcaggctacaagcagttgacaattgaaatatggagatcaacatcgggcatcgtaccaatgaaagactctttagattgcagaggtttatgttgcactcaa 28492278  T
Q  213 ataagctttgcaaatgttta 232  Q
    ||||| ||| ||||||||||    
T  28492279 ataagattttcaaatgttta 28492298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 28513063 - 28513279
Alignment:
Q  13 atcatcaactatttcacctctcgattcctccccttttcttacatcaattattatgttttcaagaagctcgcaatcaattattttcagtgtctccaacaac 112  Q
    |||||||||||||| || ||||||||||| || ||||||| ||||   |||||||| |||||||  ||| || |||  ||||| || | |||||||||||    
T  28513063 atcatcaactattttacttctcgattcctgccattttctttcatc---tattatgtattcaagaccctcacagtcatatatttccaatctctccaacaac 28513159  T
Q  113 actaggcttcgagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaa 212  Q
    |  ||||| | |||||||||||||||||||| ||||||||||||||| |||| || ||| || |  |||||||||||| | ||||||| ||||||||  |    
T  28513160 atcaggctacaagcagttgacagttgaaatatggagatcaacatcgggcatcgttccaatgaaagactctttagattgcagaggtttatgttgcactcga 28513259  T
Q  213 ataagctttgcaaatgttta 232  Q
    ||||| ||| |||| |||||    
T  28513260 ataagattttcaaacgttta 28513279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 103 - 230
Target Start/End: Original strand, 27464176 - 27464303
Alignment:
Q  103 ctccaacaacactaggcttcgagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttagg 202  Q
    |||||||||||||| ||  |||||||||||| |||||||||||||| ||||||  || ||||  | ||| | ||| ||||| | |||| | ||||||||     
T  27464176 ctccaacaacactaagcaacgagcagttgacggttgaaatagggaggtcaacaatgggcatccctccaatgtcacactcttcaaattgcagaggtttagc 27464275  T
Q  203 ttgcacttaaataagctttgcaaatgtt 230  Q
    ||||||||||||||||| ||||||||||    
T  27464276 ttgcacttaaataagctctgcaaatgtt 27464303  T

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Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 9329731 - 9329909
Alignment:
Q  54 catcaattattatgttttcaagaagctcgcaatcaattattttcagtgtctccaacaacactaggcttcgagcagttgacagttgaaatagggagatcaa 153  Q
    |||| ||||||||||||||||||||||| ||||||||||||| || | ||||||||| || ||||||   |||||||||||||||||||| || ||||||    
T  9329731 catcgattattatgttttcaagaagctcacaatcaattatttccaatctctccaacagcaataggctaacagcagttgacagttgaaataaggcgatcaa 9329830  T
Q  154 catcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaaataagctttgcaaatgttta 232  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||||| ||||||||| ||||| |||| ||||||||||    
T  9329831 catcgggcatctttccaacgacacactctttagattgaataggtttatgttgcacttgaataaacttttcaaatgttta 9329909  T

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Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 9383514 - 9383692
Alignment:
Q  54 catcaattattatgttttcaagaagctcgcaatcaattattttcagtgtctccaacaacactaggcttcgagcagttgacagttgaaatagggagatcaa 153  Q
    |||| ||||||||||||||||||||||| ||||||||||||| || | ||||||||| || ||||||   |||||||||||||||||||| || ||||||    
T  9383514 catcgattattatgttttcaagaagctcacaatcaattatttccaatctctccaacagcaataggctaacagcagttgacagttgaaataaggcgatcaa 9383613  T
Q  154 catcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaaataagctttgcaaatgttta 232  Q
    |||||| ||||||| ||||||||| |||||||||||||||||||||| ||||||||| ||||| |||| ||||||||||    
T  9383614 catcgggcatctttccaacgacacactctttagattgaataggtttatgttgcacttgaataaacttttcaaatgttta 9383692  T

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Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 9329987 - 9330202
Alignment:
Q  13 atcatcaactatttcacctctcgattcctccccttttcttacatcaattattatgttttcaagaagctcgcaatcaattattttcagtgtctccaacaac 112  Q
    |||||||| ||||||||||||||| ||||| ||||||| | ||||   |||||||| |||||||    | || ||  |||||| || | | || ||| ||    
T  9329987 atcatcaattatttcacctctcgactcctcaccttttccttcatc---tattatgtattcaagacttccacattcctttatttccaatctgtctaacgac 9330083  T
Q  113 actaggcttcgagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaa 212  Q
    |||| |||   ||| |||||||||||||||| ||||||||||||||| |||| ||  |||||||||||||||||||||||||||||||||||||||||||    
T  9330084 actaagctaacagctgttgacagttgaaataaggagatcaacatcgggcatccttctaacgacacgctctttagattgaataggtttaggttgcacttaa 9330183  T
Q  213 ataagctttgcaaatgttt 231  Q
    |||||||||||||||||||    
T  9330184 ataagctttgcaaatgttt 9330202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 9383770 - 9383985
Alignment:
Q  13 atcatcaactatttcacctctcgattcctccccttttcttacatcaattattatgttttcaagaagctcgcaatcaattattttcagtgtctccaacaac 112  Q
    |||||||| ||||||||||||||| ||||| ||||||| | ||||   |||||||| |||||||    | || ||  |||||| || | | || ||| ||    
T  9383770 atcatcaattatttcacctctcgactcctcaccttttccttcatc---tattatgtattcaagacttccacattcctttatttccaatctgtctaacgac 9383866  T
Q  113 actaggcttcgagcagttgacagttgaaatagggagatcaacatcggacatcttttcaacgacacgctctttagattgaataggtttaggttgcacttaa 212  Q
    |||| |||   ||| |||||||||||||||| ||||||||||||||| |||| ||  |||||||||||||||||||||||||||||||||||||||||||    
T  9383867 actaagctaacagctgttgacagttgaaataaggagatcaacatcgggcatccttctaacgacacgctctttagattgaataggtttaggttgcacttaa 9383966  T
Q  213 ataagctttgcaaatgttt 231  Q
    |||||||||||||||||||    
T  9383967 ataagctttgcaaatgttt 9383985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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