View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10104A_low_308 (Length: 232)
Name: NF10104A_low_308
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_308 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 13577900 - 13577674
Alignment:
| Q |
1 |
tttcttttttatataccttaatttgtgccccgagagcaacgattaacacaactcatttttaaattggttactggctttgttaataattcaaaatggtcac |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13577900 |
tttcttttttagataccttaatttgtgccccaagagcaccgattaacacaacttatttttaaattggttactgactttgttaataattcaaaatggtcac |
13577801 |
T |
|
| Q |
101 |
tatctttgtctaaccatcatcctaacaaacatgtca-ccccttaatattcagcccaacaactccatattttttcccaatctacacgaccaatgcttggtc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13577800 |
tatctttgtctaaccatcatcctaacaaacatgtcatccccttactattcagcccaacaactccatattttttcccaatttacacgaccaatgcttggtc |
13577701 |
T |
|
| Q |
200 |
tattattcttttcattccatttccaat |
226 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
13577700 |
tattattcttttcattccatttccaat |
13577674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 13566362 - 13566285
Alignment:
| Q |
144 |
atattcagcccaacaactccatattttttcccaatctacacgaccaatgcttggtctattattcttttcattccattt |
221 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||| | |||| ||| | || ||||||||||||||||||||||||| |
|
|
| T |
13566362 |
atattcagcacaacaactccatcttttttcccaatttgcacggccagtatttagtctattattcttttcattccattt |
13566285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University