View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_313 (Length: 232)

Name: NF10104A_low_313
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_313
NF10104A_low_313
[»] chr1 (4 HSPs)
chr1 (23-212)||(18438563-18438749)
chr1 (23-212)||(18449421-18449607)
chr1 (23-212)||(18454514-18454700)
chr1 (124-175)||(42080703-42080754)
[»] chr2 (6 HSPs)
chr2 (23-212)||(31320217-31320417)
chr2 (31-185)||(9446963-9447128)
chr2 (124-182)||(21949909-21949967)
chr2 (124-172)||(14555896-14555944)
chr2 (23-66)||(38346614-38346657)
chr2 (124-184)||(13698129-13698189)
[»] chr5 (3 HSPs)
chr5 (29-192)||(31610025-31610199)
chr5 (123-178)||(11888191-11888246)
chr5 (124-175)||(33417438-33417489)
[»] chr7 (4 HSPs)
chr7 (124-172)||(8425057-8425105)
chr7 (30-184)||(30559269-30559434)
chr7 (124-175)||(49094557-49094608)
chr7 (124-175)||(38836146-38836197)
[»] chr6 (1 HSPs)
chr6 (123-175)||(6982841-6982893)
[»] chr4 (3 HSPs)
chr4 (124-175)||(2048991-2049042)
chr4 (124-175)||(39735820-39735871)
chr4 (124-173)||(3958957-3959006)
[»] scaffold0141 (1 HSPs)
scaffold0141 (124-172)||(16545-16593)
[»] chr8 (1 HSPs)
chr8 (125-170)||(19168189-19168234)
[»] chr3 (1 HSPs)
chr3 (124-184)||(3830691-3830751)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 18438749 - 18438563
Alignment:
Q  23 ctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  18438749 ctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaac---tgcaagatatggaactttcaacaagacagtc 18438653  T
Q  123 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcctttactcttc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18438652 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgattcttatgactgcctcctttactcttc 18438563  T

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Target: chr1; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 18449607 - 18449421
Alignment:
Q  23 ctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  18449607 ctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaac---tgcaagatatggaactttcaacaagacagtc 18449511  T
Q  123 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcctttactcttc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18449510 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgattcttatgactgcctcctttactcttc 18449421  T

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Target: chr1; HSP #3
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 18454700 - 18454514
Alignment:
Q  23 ctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtc 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  18454700 ctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaac---tgcaagatatggaactttcaacaagacagtc 18454604  T
Q  123 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcctttactcttc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18454603 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgattcttatgactgcctcctttactcttc 18454514  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 42080703 - 42080754
Alignment:
Q  124 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 175  Q
    ||||||||||||| |||||||||||||||||  |||| ||||||||||||||    
T  42080703 gattgcttttgattacaccctttttggaacgagtttggatgtgctcactact 42080754  T

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Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 23 - 212
Target Start/End: Complemental strand, 31320417 - 31320217
Alignment:
Q  23 ctatcccactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtc 122  Q
    ||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31320417 ctatcccactaagatagattcagcaaccatctagaatagcagaagatgaacccaaataagaacaacaactgcaagatatggaactttcaacaagacaatc 31320318  T
Q  123 a-----------gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttatgactgcctcctttactctt 211  Q
    |           |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||| ||| ||||||| |||||||||    
T  31320317 acatatatttgggattgcttttgatcacaccctttttggaacgcgtttgtatgagctcactactagtgtattgcttctgatgtctgcctcttttactctt 31320218  T
Q  212 c 212  Q
    |    
T  31320217 c 31320217  T

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Target: chr2; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 31 - 185
Target Start/End: Complemental strand, 9447128 - 9446963
Alignment:
Q  31 ctaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtca------- 123  Q
    |||||||||||||||| |||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||           
T  9447128 ctaagatagattcagccaccatccaaaataacagaagttgaacccacataagaacaacaactgcaagatatggaactttcaacaagacagtcacatatat 9447029  T
Q  124 ----gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgc 185  Q
        |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  9447028 ttgggattgcttttgatcacaccctttttggaacgcgtttgtgtgtgctcactactagtgttttgc 9446963  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 21949909 - 21949967
Alignment:
Q  124 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttt 182  Q
    ||||||||||||| ||||||||||| |||||  ||||||||||||||||||||||||||    
T  21949909 gattgcttttgattacaccctttttagaacgagtttgtatgtgctcactactagtgttt 21949967  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 14555944 - 14555896
Alignment:
Q  124 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcact 172  Q
    |||||||||||||||||||||||||||||||  ||||||| || |||||    
T  14555944 gattgcttttgatcacaccctttttggaacgagtttgtatatgatcact 14555896  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 38346614 - 38346657
Alignment:
Q  23 ctatcccactaagatagattcagcaaccatctaaaataacagaa 66  Q
    ||||||||| ||||||||||||||||||| | ||||||||||||    
T  38346614 ctatcccaccaagatagattcagcaaccaaccaaaataacagaa 38346657  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 184
Target Start/End: Complemental strand, 13698189 - 13698129
Alignment:
Q  124 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttg 184  Q
    ||||||||||||||||||||||  ||||||   |||| |||||||||||||| ||| ||||    
T  13698189 gattgcttttgatcacacccttcatggaaccagtttgaatgtgctcactacttgtgctttg 13698129  T

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Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 29 - 192
Target Start/End: Complemental strand, 31610199 - 31610025
Alignment:
Q  29 cactaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtc------ 122  Q
    |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||          
T  31610199 cactaagatagattcagcaaccatctaaaatatcagaagttgaacccaaataagaacaacaactacaaaatatggaactttcaacaagacagtcgcatat 31610100  T
Q  123 -----agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttgcttcttat 192  Q
          ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||    
T  31610099 atttgggattgcttttgatcacaccctttttagaacgcgtttgtatgtgctcactactagtgttttgcttcttat 31610025  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 11888191 - 11888246
Alignment:
Q  123 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagt 178  Q
    ||||||||||||||||||||||| ||||||||  ||||||| ||||||||||||||    
T  11888191 agattgcttttgatcacacccttcttggaacgaatttgtatatgctcactactagt 11888246  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 33417489 - 33417438
Alignment:
Q  124 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 175  Q
    |||| |||||||| ||||||||||| |||||  |||||||||||||||||||    
T  33417489 gattacttttgattacaccctttttagaacgaatttgtatgtgctcactact 33417438  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 8425105 - 8425057
Alignment:
Q  124 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcact 172  Q
    |||||||||||||||||||||| ||||||||  ||||||||||||||||    
T  8425105 gattgcttttgatcacacccttcttggaacgagtttgtatgtgctcact 8425057  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 184
Target Start/End: Original strand, 30559269 - 30559434
Alignment:
Q  30 actaagatagattcagcaaccatctaaaataacagaagttgaactcaaataagaacaacaactgcaagatatggaactttcaacaagacagtca------ 123  Q
    |||||||||||||||||||||| | |||||||||||||  |||  |||||| ||||| ||||||||  |||  ||||| |||||| ||| ||||          
T  30559269 actaagatagattcagcaaccacccaaaataacagaagccgaaaccaaatatgaacagcaactgcagaatacagaactgtcaacatgaccgtcacaaatc 30559368  T
Q  124 -----gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttg 184  Q
         ||||||||||||| ||||||||||||||||   ||| ||||||||||| ||| ||| ||||    
T  30559369 tttgggattgcttttgataacaccctttttggaacaagtttctatgtgctcacgacttgtgctttg 30559434  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 49094557 - 49094608
Alignment:
Q  124 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 175  Q
    ||||||||||||| ||||| |||||||||||  |||||||||||||||||||    
T  49094557 gattgcttttgataacaccttttttggaacgtgtttgtatgtgctcactact 49094608  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 38836197 - 38836146
Alignment:
Q  124 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 175  Q
    ||||||||||||| ||||| |||||||||||  ||||||| |||||||||||    
T  38836197 gattgcttttgataacaccatttttggaacgagtttgtatatgctcactact 38836146  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 6982893 - 6982841
Alignment:
Q  123 agattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 175  Q
    |||||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  6982893 agattgcttttgattacacccttttttgaacgagtttgtatgtgctcactact 6982841  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 2049042 - 2048991
Alignment:
Q  124 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 175  Q
    ||||||||||||| |||||||||||||||||  ||||||| |||||||||||    
T  2049042 gattgcttttgataacaccctttttggaacgagtttgtatatgctcactact 2048991  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 39735871 - 39735820
Alignment:
Q  124 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactact 175  Q
    ||||||||||||| |||||||| ||||||||  |||||||||||||||||||    
T  39735871 gattgcttttgattacacccttcttggaacgagtttgtatgtgctcactact 39735820  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 124 - 173
Target Start/End: Original strand, 3958957 - 3959006
Alignment:
Q  124 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcacta 173  Q
    ||||||||||||| ||||||||||| |||||  |||||||||||||||||    
T  3958957 gattgcttttgatgacaccctttttagaacgagtttgtatgtgctcacta 3959006  T

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Target: scaffold0141 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 16545 - 16593
Alignment:
Q  124 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcact 172  Q
    |||||||||||||||||||||| ||||||||  ||| ||||||||||||    
T  16545 gattgcttttgatcacacccttcttggaacgagtttatatgtgctcact 16593  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 19168234 - 19168189
Alignment:
Q  125 attgcttttgatcacaccctttttggaacgcttttgtatgtgctca 170  Q
    |||||||||||| ||||||||||| |||||  ||||||||||||||    
T  19168234 attgcttttgatgacaccctttttagaacgagtttgtatgtgctca 19168189  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 3830691 - 3830751
Alignment:
Q  124 gattgcttttgatcacaccctttttggaacgcttttgtatgtgctcactactagtgttttg 184  Q
    |||||||||||||||||| |||  |||||||  |||| |||||||||||||| ||| ||||    
T  3830691 gattgcttttgatcacactcttcatggaacgagtttgaatgtgctcactacttgtgctttg 3830751  T

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