View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_317 (Length: 231)
Name: NF10104A_low_317
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_317 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 9417322 - 9417536
Alignment:
| Q |
1 |
acactagtttttagaaggggagaattgtgagttataaaatactcatcatttgagttgtacttgcataattaccgaaatatcaaatttttatttttattta |
100 |
Q |
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| T |
9417322 |
acactagtgtttagaagcggagaattgtgaattataaaatactcatcatttgagttttac----------accgaaatatcaaatttttatttttattta |
9417411 |
T |
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| Q |
101 |
tgccacatcattaatagttgtaaatatttttaaacctagttttagcaaataactatataaataagagcaatccaaagttatatttacttttctgttaatt |
200 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9417412 |
tgccacatcattaatagttataaatatttttaaacctagttttagcaaataactatataaataagagcaatccaaagttatatttacttttctgtcaatt |
9417511 |
T |
|
| Q |
201 |
tacgtatcacaactcagtctcaatt |
225 |
Q |
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|||||||||||||||| |||||||| |
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| T |
9417512 |
tacgtatcacaactcaatctcaatt |
9417536 |
T |
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