View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10104A_low_321 (Length: 231)
Name: NF10104A_low_321
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_321 |
 | |
|
| [»] scaffold0012 (1 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
| [»] scaffold0717 (1 HSPs) |
| | |
|
| [»] scaffold0069 (1 HSPs) |
| | |
|
| [»] scaffold0006 (1 HSPs) |
| |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
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|
| [»] chr4 (2 HSPs) |
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| [»] scaffold0460 (2 HSPs) |
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|
Alignment Details
Target: chr5 (Bit Score: 109; Significance: 6e-55; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 95 - 227
Target Start/End: Original strand, 15912794 - 15912926
Alignment:
| Q |
95 |
tactttgattcagtggtgattggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaa |
194 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
15912794 |
tactttgatttagtggtgattggaacactcaacagcaacaacacaccacatcaattttcattttccatcgtcgtcatacaatacatttgatttgcagaaa |
15912893 |
T |
|
| Q |
195 |
gggttgttgctgaattgaaacagacttcagggt |
227 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
15912894 |
gggttgttgctgaattgaaacaaacttcagggt |
15912926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 39056132 - 39056247
Alignment:
| Q |
116 |
ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac |
215 |
Q |
| |
|
|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39056132 |
ggaacactcagcagcaacaacacaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac |
39056231 |
T |
|
| Q |
216 |
agacttcagggtatgg |
231 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
39056232 |
aaacttcagggtatgg |
39056247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 95 - 227
Target Start/End: Complemental strand, 7183544 - 7183412
Alignment:
| Q |
95 |
tactttgattcagtggtgattggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaa |
194 |
Q |
| |
|
|||||||||||| || |||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
7183544 |
tactttgattcattgatgattggaacactcaacaacaacaacacaccacatcaattttcattttccatcgtcgtcttacgatacacttgatttgcaaaaa |
7183445 |
T |
|
| Q |
195 |
gggttgttgctgaattgaaacagacttcagggt |
227 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
7183444 |
gggttgttgctgaattgaaacaaacttcagggt |
7183412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 33869165 - 33869050
Alignment:
| Q |
116 |
ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac |
215 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
33869165 |
ggaacactcaacaacaacaacacaccacatcaatttccattttccatcgtcgtcatacgatacacttgttttgcaaaaagggttgttgctgaattgaaac |
33869066 |
T |
|
| Q |
216 |
agacttcagggtatgg |
231 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
33869065 |
aaacttcagggtatgg |
33869050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 7183630 - 7183573
Alignment:
| Q |
4 |
tcgaagaatatagggaagagtgattcagatctgatatgagttgtgtaactcaattgcc |
61 |
Q |
| |
|
|||||||| | ||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
7183630 |
tcgaagaagagagggaagagtgattcagatatgatacgagttgtgtaactcaattgcc |
7183573 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 15912707 - 15912761
Alignment:
| Q |
4 |
tcgaagaatatagggaagagtgattcagatctgatatgagttgtgtaactcaatt |
58 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
15912707 |
tcgaagaagagagggaagagtgattcagatctgatacgagttgtgtaacttaatt |
15912761 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 119588 - 119473
Alignment:
| Q |
116 |
ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac |
215 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
119588 |
ggaacactcaacagcaacaacacaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac |
119489 |
T |
|
| Q |
216 |
agacttcagggtatgg |
231 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
119488 |
aaacttcagggtatgg |
119473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 45402550 - 45402665
Alignment:
| Q |
116 |
ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac |
215 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45402550 |
ggaacactcaacaacaacaacacaccacatcaattttcattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac |
45402649 |
T |
|
| Q |
216 |
agacttcagggtatgg |
231 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
45402650 |
aaacttcagggtatgg |
45402665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 6797066 - 6797181
Alignment:
| Q |
116 |
ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac |
215 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6797066 |
ggaacactcaacagcaacaacacaccacatcaatttccatttttcatcgtcgtcatacaatacacttgatttgcataaagggttgttgctgaattgaaac |
6797165 |
T |
|
| Q |
216 |
agacttcagggtatgg |
231 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
6797166 |
aaacttcagggtatgg |
6797181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 32233377 - 32233262
Alignment:
| Q |
116 |
ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac |
215 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
32233377 |
ggaacactcaacagcaacaacacaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagtaagggttgttgctgaattgaaac |
32233278 |
T |
|
| Q |
216 |
agacttcagggtatgg |
231 |
Q |
| |
|
| |||||| ||||||| |
|
|
| T |
32233277 |
aaacttcatggtatgg |
32233262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0717 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0717
Description:
Target: scaffold0717; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 116 - 230
Target Start/End: Original strand, 7022 - 7136
Alignment:
| Q |
116 |
ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac |
215 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7022 |
ggaacactcaacaacaacaacacaccacatcaatttccattttccattgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaagc |
7121 |
T |
|
| Q |
216 |
agacttcagggtatg |
230 |
Q |
| |
|
| ||||||||||||| |
|
|
| T |
7122 |
aaacttcagggtatg |
7136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 51745 - 51638
Alignment:
| Q |
116 |
ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac |
215 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51745 |
ggaacactcaatagcaacaacacaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaat |
51646 |
T |
|
| Q |
216 |
agacttca |
223 |
Q |
| |
|
| |||||| |
|
|
| T |
51645 |
aaacttca |
51638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 209712 - 209597
Alignment:
| Q |
116 |
ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac |
215 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
209712 |
ggaacaatcaacagcaacaacacaccacatcaattttcattttccatcgtcgtcatacgatacacttaatttgcagaaaggattgttgctgaattgaaac |
209613 |
T |
|
| Q |
216 |
agacttcagggtatgg |
231 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
209612 |
aaacttcagggtatgg |
209597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 13590853 - 13590738
Alignment:
| Q |
116 |
ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac |
215 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
13590853 |
ggaacactcaacagcaacaacaaaccacatcaatttccattttccatcgttgtcatacaatacacttgatttgcagaaagggttgttggtgaattgaaac |
13590754 |
T |
|
| Q |
216 |
agacttcagggtatgg |
231 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
13590753 |
aaacttcagggtatgg |
13590738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 20372583 - 20372476
Alignment:
| Q |
116 |
ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac |
215 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20372583 |
ggaacactcaatagcaacaacacaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaat |
20372484 |
T |
|
| Q |
216 |
agacttca |
223 |
Q |
| |
|
| |||||| |
|
|
| T |
20372483 |
aaacttca |
20372476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 165 - 231
Target Start/End: Complemental strand, 20481430 - 20481364
Alignment:
| Q |
165 |
tcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaacagacttcagggtatgg |
231 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
20481430 |
tcgtcatgcgatacacttgatttgcagaaagggttgttgctgaattgaaacaaacttcaaggtatgg |
20481364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 7851722 - 7851607
Alignment:
| Q |
116 |
ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac |
215 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||| || |
|
|
| T |
7851722 |
ggaacactcaacagtaacaacacaccacatcaatttccattttccatcgtggtcatacgatacatttgatttgcagaaagggttgttgatgaattgatac |
7851623 |
T |
|
| Q |
216 |
agacttcagggtatgg |
231 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
7851622 |
aaacttcagggtatgg |
7851607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 116 - 231
Target Start/End: Original strand, 2847790 - 2847905
Alignment:
| Q |
116 |
ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac |
215 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
2847790 |
ggaacactcaacaacaataacacaccacatcaatttctattttccatcatcgtcatacgatacacttgatttgcataaagggttgttgttgaattgaaac |
2847889 |
T |
|
| Q |
216 |
agacttcagggtatgg |
231 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
2847890 |
aaacttcagggtatgg |
2847905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 184 - 231
Target Start/End: Original strand, 20587992 - 20588039
Alignment:
| Q |
184 |
atttgcagaaagggttgttgctgaattgaaacagacttcagggtatgg |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20587992 |
atttgcagaaagggttgttgctgaattgaaacaaacttcagggtatgg |
20588039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0460 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0460
Description:
Target: scaffold0460; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 116 - 231
Target Start/End: Complemental strand, 1990 - 1875
Alignment:
| Q |
116 |
ggaacactcaacagcaacaacgcaccacatcaatttccattttccatcgtcgtcatacgatacacttgatttgcagaaagggttgttgctgaattgaaac |
215 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||| |||||| ||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||| |
|
|
| T |
1990 |
ggaacactcaacagcaacaacacaacacatcaattttcatttttcatcgtcttcatacgatacacttgatttgcataaagagttgttgctgaattgaaac |
1891 |
T |
|
| Q |
216 |
agacttcagggtatgg |
231 |
Q |
| |
|
| |||||| ||||||| |
|
|
| T |
1890 |
aaacttcaaggtatgg |
1875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0460; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 158
Target Start/End: Complemental strand, 2046 - 2004
Alignment:
| Q |
116 |
ggaacactcaacagcaacaacgcaccacatcaatttccatttt |
158 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2046 |
ggaacactcaacagcaacaacacaccacatcaatttccatttt |
2004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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