View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10104A_low_322 (Length: 231)
Name: NF10104A_low_322
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_322 |
 | |
|
| [»] scaffold0771 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 19 - 226
Target Start/End: Original strand, 20900049 - 20900256
Alignment:
| Q |
19 |
catcagagttaattttgtttatgatcatgttttaggctgcaaatcccggttgtattttggaagactttgtgagatggtactctcctcctgattggactga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20900049 |
catcagagttaattttgtttatgatcatgttttaggctgcaaatcccggttgtattttggaagactttgtgagatggtactctcctcctgattggactga |
20900148 |
T |
|
| Q |
119 |
aattgaggcaagtactgaggatagttgttcttctgatggtagtggtagcgattcttcgtctaacagaggccatctaagtcgacggatgcgataagaaggt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
20900149 |
aattgaggcaagtactgaggatagttgttcttctgatggtagtggtagcgattcttcgtctaacagaggtcatctaagtcgacggatgcgaaaagaaggt |
20900248 |
T |
|
| Q |
219 |
atgcctgt |
226 |
Q |
| |
|
||| |||| |
|
|
| T |
20900249 |
atgactgt |
20900256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 13949820 - 13950026
Alignment:
| Q |
24 |
gagttaattttgtttatgatcatgttttaggctgcaaatcccggttgtat--tttggaagactttgtgagatggtactctcctcctgattggactgaaat |
121 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13949820 |
gagttaattttgcttatgatcatgtttaaggctgcaaatcccggttgtatattttggaagactttgtgagatggtactctcctcctgattggactgaaat |
13949919 |
T |
|
| Q |
122 |
tgaggcaagtactgaggatagttgttcttctgatggtagtggtagcgattcttcgtctaacagaggccatctaagtcgacggatgcgataagaaggtatg |
221 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||||||| || |||||||||| ||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
13949920 |
tgaggcaagtacagaggatagttgttcttctgatggtagtagtagcgagtcgtcgtctaacaaaggtcatctaagtcgacggatgcgaaaagaaggtatg |
13950019 |
T |
|
| Q |
222 |
cctgtca |
228 |
Q |
| |
|
| ||||| |
|
|
| T |
13950020 |
cttgtca |
13950026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0771 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: scaffold0771
Description:
Target: scaffold0771; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 1960 - 2166
Alignment:
| Q |
24 |
gagttaattttgtttatgatcatgttttaggctgcaaatcccggttgtat--tttggaagactttgtgagatggtactctcctcctgattggactgaaat |
121 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1960 |
gagttaattttgcttatgatcatgtttaaggctgcaaatcccggttgtatattttggaagactttgtgagatggtactctcctcctgattggactgaaat |
2059 |
T |
|
| Q |
122 |
tgaggcaagtactgaggatagttgttcttctgatggtagtggtagcgattcttcgtctaacagaggccatctaagtcgacggatgcgataagaaggtatg |
221 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||||||| || |||||||||| ||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
2060 |
tgaggcaagtacagaggatagttgttcttctgatggtagtagtagcgagtcgtcgtctaacaaaggtcatctaagtcgacggatgcgaaaagaaggtatg |
2159 |
T |
|
| Q |
222 |
cctgtca |
228 |
Q |
| |
|
| ||||| |
|
|
| T |
2160 |
cttgtca |
2166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 51 - 139
Target Start/End: Original strand, 40701051 - 40701139
Alignment:
| Q |
51 |
taggctgcaaatcccggttgtattttggaagactttgtgagatggtactctcctcctgattggactgaaattgaggcaagtactgagga |
139 |
Q |
| |
|
|||||||| ||||| || ||||||||||| || ||||| |||||| |||| |||||||||||||| || | |||||| |||| |||||| |
|
|
| T |
40701051 |
taggctgcgaatcctggatgtattttggaggattttgtaagatggcactcacctcctgattggacagacaatgaggctagtattgagga |
40701139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University