View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_328 (Length: 230)

Name: NF10104A_low_328
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_328
NF10104A_low_328
[»] chr6 (3 HSPs)
chr6 (1-224)||(51802-52025)
chr6 (62-161)||(9557495-9557592)
chr6 (119-173)||(12834025-12834079)
[»] chr4 (4 HSPs)
chr4 (3-224)||(50655138-50655356)
chr4 (62-224)||(48309686-48309846)
chr4 (68-216)||(12843002-12843148)
chr4 (56-224)||(45068188-45068354)
[»] chr8 (5 HSPs)
chr8 (1-224)||(41926830-41927051)
chr8 (68-222)||(36650495-36650647)
chr8 (119-224)||(42241292-42241396)
chr8 (71-224)||(4040382-4040534)
chr8 (184-224)||(34152082-34152122)
[»] chr1 (5 HSPs)
chr1 (123-224)||(9644301-9644402)
chr1 (62-165)||(3227764-3227865)
chr1 (62-165)||(51871074-51871175)
chr1 (68-224)||(25410636-25410790)
chr1 (119-159)||(52372586-52372626)
[»] chr7 (5 HSPs)
chr7 (60-221)||(33743341-33743500)
chr7 (78-224)||(23176965-23177108)
chr7 (62-222)||(26557889-26558047)
chr7 (119-224)||(46028503-46028608)
chr7 (2-30)||(46028695-46028723)
[»] chr5 (3 HSPs)
chr5 (74-224)||(41650408-41650556)
chr5 (123-224)||(3465366-3465467)
chr5 (62-189)||(16154539-16154664)
[»] chr2 (3 HSPs)
chr2 (71-224)||(10994312-10994463)
chr2 (78-220)||(29682588-29682728)
chr2 (120-221)||(43411441-43411542)
[»] chr3 (2 HSPs)
chr3 (119-224)||(41640750-41640855)
chr3 (123-224)||(34213078-34213179)


Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 51802 - 52025
Alignment:
Q  1 gtctaggtggttggggtgggagtttgtgattctcccgcggtcttactcaacagttctgtcttttacaggcttaggaggggggaagagagttaggttaagt 100  Q
    ||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  51802 gtctaggtggttgaggtgggagtttgtgattcccccgcggtcttgctcaacagttctgtcttttacgggcttaggaggggggaagagagttaggttaagt 51901  T
Q  101 ctgctcttgatttggcatatgctgttatttggaccatctggacgtcccgtaatgaccttatcttttctagtggctccctcggagaggagcctatggtgga 200  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||    
T  51902 ctgctcctgatttggcatatgctgttatttggaccatctggacgtcccgtaatgaccttatcttttctggtggctccctcagagaggagcctatggtgga 52001  T
Q  201 tcgagctaaactcttagcttggaa 224  Q
    ||||||||||||||||||||||||    
T  52002 tcgagctaaactcttagcttggaa 52025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 161
Target Start/End: Complemental strand, 9557592 - 9557495
Alignment:
Q  62 tttacaggcttaggaggggggaagagagttaggttaagtctgct-cttgatttggcatatgctgttatttggaccatctggacgtcccgtaatgacctta 160  Q
    |||||||||||||| |||  |||||||||||||||| || || | |||| ||||    ||| ||||||||||||||||| ||||||||| ||||||||||    
T  9557592 tttacaggcttaggtgggaagaagagagttaggttatgtttggttcttgttttgc---atgttgttatttggaccatcttgacgtcccgaaatgacctta 9557496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 12834079 - 12834025
Alignment:
Q  119 atgctgttatttggaccatctggacgtcccgtaatgaccttatcttttctagtgg 173  Q
    |||||||||||||||||||||||| || ||| ||||| ||||| |||||||||||    
T  12834079 atgctgttatttggaccatctggatgttccggaatgatcttattttttctagtgg 12834025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 112; Significance: 9e-57; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 50655356 - 50655138
Alignment:
Q  3 ctaggtggttggggtgggagtttgtgattctcccgcggtcttactcaacagttc-tgtcttttacaggcttaggaggggggaagagagttaggttaagtc 101  Q
    ||||||||||||| |||||||||||||||| |||  |||||  | ||||||||| |||||||||| |||||||||||||| ||||||||||||||| ||     
T  50655356 ctaggtggttgggttgggagtttgtgattc-cccaaggtctagcacaacagttcatgtcttttacgggcttaggaggggg-aagagagttaggttaggtt 50655259  T
Q  102 tgctcttgatttggcatatgctgttatttggaccatctggacgtcccgtaatgaccttatcttttctagtggctccctcggagaggagcctatggtggat 201  Q
    ||||| || ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| || || |||||    
T  50655258 tgctcctggtttggcat--gctgttatttggaccatctggacgtcccgtaatgaccttatcttttctggtggcgccctcagagaggagtctgtgatggat 50655161  T
Q  202 cgagctaaactcttagcttggaa 224  Q
    |  ||||||||||||||||||||    
T  50655160 caggctaaactcttagcttggaa 50655138  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 62 - 224
Target Start/End: Complemental strand, 48309846 - 48309686
Alignment:
Q  62 tttacaggcttaggaggggggaagagagttaggttaagtctgct-cttgatttggcatatgctgttatttggaccatctggacgtcccgtaatgacctta 160  Q
    |||||||| ||||||||||||||||||||||||||| || |||| |||| ||||||||||  ||||||||||||||| ||  | ||||  ||||||||||    
T  48309846 tttacagggttaggaggggggaagagagttaggttaggtttgcttcttg-tttggcatat--tgttatttggaccatttgagcatcccagaatgacctta 48309750  T
Q  161 tcttttctagtggctccctcggagaggagcctatggtggatcgagctaaactcttagcttggaa 224  Q
    ||||| || ||||||  ||| ||||||||||  |||||||| |||  |||||||||||||||||    
T  48309749 tctttgctggtggcttactccgagaggagccagtggtggatagagtgaaactcttagcttggaa 48309686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 68 - 216
Target Start/End: Complemental strand, 12843148 - 12843002
Alignment:
Q  68 ggcttaggaggggggaagagagttaggttaagtctgctcttgatttggcatatgctgttatttggaccatctggacgtcccgtaatgaccttatcttttc 167  Q
    |||||||||||||| |||||||||||| || || ||||  || |||||||| |  |||||| |||||||| ||||| ||||| ||||||||||| |||||    
T  12843148 ggcttaggagggggaaagagagttaggataggtttgcttctggtttggcattt--tgttatctggaccatttggacttcccggaatgaccttattttttc 12843051  T
Q  168 tagtggctccctcggagaggagcctatggtggatcgagctaaactctta 216  Q
    | | | | ||||| ||||||| | |||||||||  ||||||||||||||    
T  12843050 tggcgacgccctcagagaggatcttatggtggagagagctaaactctta 12843002  T

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Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 45068354 - 45068188
Alignment:
Q  56 ctgtcttttacaggcttaggaggggggaagagagttaggttaagtctgct-cttgatttggcatatgctgttatttggaccatctggacgtcccgtaatg 154  Q
    ||||||||||| || ||||| |||||||||||||| |||||| || |||| |||| |||| ||| |  | ||||||||| ||||||||||||||  || |    
T  45068354 ctgtcttttacgggtttaggtggggggaagagagtgaggttaggtttgcttcttg-tttgacatgt--ttttatttggaacatctggacgtccctgaacg 45068258  T
Q  155 accttatcttttctagtggctccctcggagaggagcctatggtggatcgagctaaactcttagcttggaa 224  Q
    ||||| | ||||||||| || | ||    ||||||||| | |||||| ||||||||||||||||||||||    
T  45068257 accttttgttttctagttgcactcttcatgaggagcctgtagtggatagagctaaactcttagcttggaa 45068188  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 41926830 - 41927051
Alignment:
Q  1 gtctaggtggttggggtgggagtttgtgattctcccgcggtcttactcaacagttc-tgtcttttacaggcttaggaggggggaagagagttaggttaag 99  Q
    |||||||||||||||||||||||| || || | | |  |||||| | ||||||||| |||  ||||| |||||||| || |||| ||||| ||||||| |    
T  41926830 gtctaggtggttggggtgggagttagttatcc-cactaggtcttgcccaacagttcctgtactttacgggcttaggtggtgggaggagagctaggttagg 41926928  T
Q  100 tctgctcttgatttggcatatgctgttatttggaccatctggacgtcccgtaatgaccttatcttttctagtggctccctcggagaggagcctatggtgg 199  Q
    ||||||  || ||||||||  ||||||||||||||||| ||||| || || ||||| ||||| |||||| ||||  | ||  ||||||||||| ||||||    
T  41926929 tctgcttctggtttggcat--gctgttatttggaccatttggacttctcggaatgatcttattttttctggtggtgctcttcgagaggagcctgtggtgg 41927026  T
Q  200 atcgagctaaactcttagcttggaa 224  Q
    || |||| || ||||||||||||||    
T  41927027 atagagcgaatctcttagcttggaa 41927051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 68 - 222
Target Start/End: Complemental strand, 36650647 - 36650495
Alignment:
Q  68 ggcttaggaggggggaagagagttaggttaagtctgctcttgatttggcatatgctgttatttggaccatctggacgtcccgtaatgaccttatcttttc 167  Q
    |||||||||||||| | ||||||||||||| || ||||| |  ||||||||  ||||||||||||||||| ||  ||| ||| || |||||||||||| |    
T  36650647 ggcttaggagggggtaggagagttaggttaggtttgctccttgtttggcat--gctgttatttggaccatttgagcgttccggaacgaccttatctttgc 36650550  T
Q  168 tagtggctccctcggagaggagcctatggtggatcgagctaaactcttagcttgg 222  Q
      ||||||  ||| ||||||||||  |||||||  ||| ||||||||||||||||    
T  36650549 gggtggcttactccgagaggagccagtggtggacagagttaaactcttagcttgg 36650495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 42241396 - 42241292
Alignment:
Q  119 atgctgttatttggaccatctggacgtcccgtaatgaccttatcttttctagtggctccctcggagaggagcctatggtggatcgagctaaactcttagc 218  Q
    ||||||||||||| ||||||||||| ||| | || |||||||| |||||| ||||| ||||| | ||||||||| ||||||||  ||| |||||||||||    
T  42241396 atgctgttatttgaaccatctggacatccagaaacgaccttat-ttttctggtggcgccctccgtgaggagcctttggtggataaagcgaaactcttagc 42241298  T
Q  219 ttggaa 224  Q
    ||||||    
T  42241297 ttggaa 42241292  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 224
Target Start/End: Complemental strand, 4040534 - 4040382
Alignment:
Q  71 ttaggaggggggaagagagttaggttaagtctgctcttgatttggcatatgctgttatttggaccatctggacgtcccgtaatgaccttatcttttctag 170  Q
    ||||| ||||||||||| |||||| || || ||||| |  |||||||| |  |||||| |||||||||||||| ||| | || |||||||| |||||| |    
T  4040534 ttaggtggggggaagagtgttaggctaggtttgctcattgtttggcatgt--tgttatctggaccatctggacatccagaaacgaccttattttttctgg 4040437  T
Q  171 tggctccctcggagaggagcctatggt-ggatcgagctaaactcttagcttggaa 224  Q
    |||| || |  |||||||| || |||| |||| |||| |||| ||||||||||||    
T  4040436 tggcacctttcgagaggagtctttggtgggatagagcgaaacccttagcttggaa 4040382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 224
Target Start/End: Complemental strand, 34152122 - 34152082
Alignment:
Q  184 gaggagcctatggtggatcgagctaaactcttagcttggaa 224  Q
    ||||||||| | |||||| ||||||||||||||||||||||    
T  34152122 gaggagcctgttgtggatagagctaaactcttagcttggaa 34152082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 9644301 - 9644402
Alignment:
Q  123 tgttatttggaccatctggacgtcccgtaatgaccttatcttttctagtggctccctcggagaggagcctatggtggatcgagctaaactcttagcttgg 222  Q
    |||||||||||||||||||| |||||| || ||||||||||| ||| ||||||| ||| | |||||||||||||||||| |||| |||||||| | ||||    
T  9644301 tgttatttggaccatctggatgtcccggaacgaccttatcttctctggtggctctctccgtgaggagcctatggtggatagagcgaaactcttgggttgg 9644400  T
Q  223 aa 224  Q
    ||    
T  9644401 aa 9644402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 165
Target Start/End: Complemental strand, 3227865 - 3227764
Alignment:
Q  62 tttacaggcttaggaggggggaagagagttaggttaagtctgctcttgatttggcatatgctgttatttggaccatctggacgtcccgtaatgaccttat 161  Q
    |||||||| ||||| ||||||| || |||||||||| || |||| ||  ||| ||||  |||||||||||||||||  || |||||||||||||||||||    
T  3227865 tttacaggtttaggtggggggaggaaagttaggttatgtttgctttttgtttagcat--gctgttatttggaccattcgggcgtcccgtaatgaccttat 3227768  T
Q  162 cttt 165  Q
    ||||    
T  3227767 cttt 3227764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 165
Target Start/End: Original strand, 51871074 - 51871175
Alignment:
Q  62 tttacaggcttaggaggggggaagagagttaggttaagtctgct-cttgatttggcatatgctgttatttggaccatctggacgtcccgtaatgacctta 160  Q
    ||||| || ||||| ||||||| ||||||||||||| || |||| |||| ||||||||  |||||||| |||||||| |||||| |||| ||||||||||    
T  51871074 tttacgggtttaggtggggggacgagagttaggttaggtttgcttcttg-tttggcat--gctgttatctggaccatttggacgacccgaaatgacctta 51871170  T
Q  161 tcttt 165  Q
    |||||    
T  51871171 tcttt 51871175  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 224
Target Start/End: Complemental strand, 25410790 - 25410636
Alignment:
Q  68 ggcttaggaggggggaagagagttaggttaagtctgc-tcttgatttggcatatgctgttatttggaccatctggacgtcccgtaatgaccttatctttt 166  Q
    |||||||| || |||||||||| || ||||||||||| ||||| ||||||  ||||||||||||| ||||||| ||| || | || ||| ||||| ||||    
T  25410790 ggcttaggtggtgggaagagagatatgttaagtctgcttcttg-tttggc--atgctgttatttgaaccatctagacttctcatagtgatcttatttttt 25410694  T
Q  167 ctagtggctccctcggagaggagcctatggtggatcgagctaaactcttagcttggaa 224  Q
     | ||||  | ||  ||||||| ||| || ||||| |||  |||||||||||||||||    
T  25410693 ttggtggtgctcttcgagaggaacctgtgatggatagagtgaaactcttagcttggaa 25410636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 52372586 - 52372626
Alignment:
Q  119 atgctgttatttggaccatctggacgtcccgtaatgacctt 159  Q
    ||||| ||||||||||||||||||| ||||| |||||||||    
T  52372586 atgctattatttggaccatctggacctcccggaatgacctt 52372626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 60 - 221
Target Start/End: Original strand, 33743341 - 33743500
Alignment:
Q  60 cttttacaggcttaggaggggggaagagagttaggttaagtctgct-cttgatttggcatatgctgttatttggaccatctggacgtcccgtaatgacct 158  Q
    ||||||| || ||||||||||||| || |||||||||| || |||| |||| ||||||||  ||||||||||||||||| ||| ||||||| || |||||    
T  33743341 cttttacgggtttaggaggggggaggaaagttaggttatgtttgcttcttg-tttggcat--gctgttatttggaccatttgggcgtcccgaaacgacct 33743437  T
Q  159 tatcttttctagtggctccctcggagaggagcctatggtggatcgagctaaactcttagcttg 221  Q
    ||||||| || ||||||  ||| ||||||||||  |||||||  ||| |||| ||||||||||    
T  33743438 tatctttgctggtggcttactccgagaggagccagtggtggacagagttaaaatcttagcttg 33743500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 78 - 224
Target Start/End: Complemental strand, 23177108 - 23176965
Alignment:
Q  78 gggggaagagagttaggttaagtctgctcttgatttggcatatgctgttatttggaccatctggacgtcccgtaatgaccttatcttttctagtggctcc 177  Q
    |||||||||||||||| ||| |||| ||  || |||| ||| |  |||||||||||||||||||||||| || || | |||||| || ||||||||| |     
T  23177108 gggggaagagagttagattaggtcttcttctggtttgacatgt--tgttatttggaccatctggacgtctcggaacg-ccttattttctctagtggcact 23177012  T
Q  178 ctcggagaggagcctatggtggatcgagctaaactcttagcttggaa 224  Q
    ||| | ||||||||| ||||| || |||  |||||||||||||||||    
T  23177011 ctccgtgaggagcctgtggtgtatagagtgaaactcttagcttggaa 23176965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 222
Target Start/End: Complemental strand, 26558047 - 26557889
Alignment:
Q  62 tttacaggcttaggaggggggaagagagttaggttaagtctgc-tcttgatttggcatatgctgttatttggaccatctggacgtcccgtaatgacctta 160  Q
    ||||| || ||||||||||||| ||||||||||||| || ||| ||||| ||||||  ||| ||||||||||||||| ||| | |||   || |||| ||    
T  26558047 tttacgggtttaggaggggggaggagagttaggttaggtttgcttcttg-tttggc--atgttgttatttggaccatttgggcatcctagaacgaccgta 26557951  T
Q  161 tcttttctagtggctccctcggagaggagcctatggtggatcgagctaaactcttagcttgg 222  Q
    ||||| || ||||||  ||| | ||||||||| |||||||  ||| |||||| |||||||||    
T  26557950 tctttgctggtggcttactccgtgaggagcctgtggtggacagagttaaacttttagcttgg 26557889  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 224
Target Start/End: Complemental strand, 46028608 - 46028503
Alignment:
Q  119 atgctgttatttggaccatctggacgtcccgtaatgaccttatcttttctagtggctccctcggagaggagcctatggtggatcgagctaaactcttagc 218  Q
    |||||||||||||||||||||| || ||||| ||||||||| | ||||||  |||  |||   | |||| | || |||||||| |||| |||||||||||    
T  46028608 atgctgttatttggaccatctgaacttcccggaatgaccttgttttttctgatggtgcccatagtgaggggtctgtggtggatagagcgaaactcttagc 46028509  T
Q  219 ttggaa 224  Q
    ||||||    
T  46028508 ttggaa 46028503  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 30
Target Start/End: Complemental strand, 46028723 - 46028695
Alignment:
Q  2 tctaggtggttggggtgggagtttgtgat 30  Q
    |||||||||||||||||||||||||||||    
T  46028723 tctaggtggttggggtgggagtttgtgat 46028695  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 74 - 224
Target Start/End: Original strand, 41650408 - 41650556
Alignment:
Q  74 ggaggggggaagagagttaggttaagtctgctcttgatttggcatatgctgttatttggaccatctggacgtcccgtaatgaccttatcttttctagtgg 173  Q
    |||||||| || |||||||||||| |||||||  || ||||||||  ||||| ||||||||||| ||||||||||  |||||| | || |||||| ||||    
T  41650408 ggagggggaaatagagttaggttaggtctgcttctggtttggcat--gctgtcatttggaccatttggacgtcccaaaatgacttgattttttctggtgg 41650505  T
Q  174 ctccctcggagaggagcctatggtggatcgagctaaactcttagcttggaa 224  Q
    | | || ||||| | |  | |||||||| |||| |||||||||||||||||    
T  41650506 cgctcttggagaagtgtatgtggtggatagagcgaaactcttagcttggaa 41650556  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 3465467 - 3465366
Alignment:
Q  123 tgttatttggaccatctggacgtcccgtaatgaccttatcttttctagtggctccctcggagaggagcctatggtggatcgagctaaactcttagcttgg 222  Q
    ||||||||||||||||| ||| ||| | || |||||||| |||||| ||||| || |  |||||||| || |||||||| |||| |||||||||||||||    
T  3465467 tgttatttggaccatctagacatccagaaacgaccttattttttctggtggcacctttcgagaggagtctttggtggatagagcgaaactcttagcttgg 3465368  T
Q  223 aa 224  Q
    ||    
T  3465367 aa 3465366  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 189
Target Start/End: Complemental strand, 16154664 - 16154539
Alignment:
Q  62 tttacaggcttaggaggggggaagagagttaggttaagtctgctcttgatttggcatatgctgttatttggaccatctggacgtcccgtaatgaccttat 161  Q
    ||||| || |||||| |||||||||||||||||||| || ||||  | |||||||  ||||| ||||||||||||| ||||||||    |||||||||||    
T  16154664 tttacggggttaggaagggggaagagagttaggttaggtttgcttcttatttggc--atgctattatttggaccatttggacgtcttaaaatgaccttat 16154567  T
Q  162 cttttctagtggctccctcggagaggag 189  Q
    |||| || ||||||  ||| ||||||||    
T  16154566 ctttgctggtggcttactccgagaggag 16154539  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 224
Target Start/End: Original strand, 10994312 - 10994463
Alignment:
Q  71 ttaggaggggggaagagagttaggttaagtctgctcttgatttggcatatgctgttatttggaccatctggacgtcccgtaatgaccttatcttttctag 170  Q
    ||||| ||||||| ||||||||||||| || |||| ||  ||||||||  |||||||| |||||||| |||  | |||||||||||||||||||| || |    
T  10994312 ttaggtggggggaggagagttaggttaggtttgctttttgtttggcat--gctgttatctggaccatttgggagacccgtaatgaccttatctttgctgg 10994409  T
Q  171 tggctccctcggagaggagcctatggtggatcgagctaaactcttagcttggaa 224  Q
    |||    ||| | ||| ||||  |||||||| ||| ||||||||||||||||||    
T  10994410 tggtgttctccgtgagaagccagtggtggatagagttaaactcttagcttggaa 10994463  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 220
Target Start/End: Original strand, 29682588 - 29682728
Alignment:
Q  78 gggggaagagagttaggttaagtctgct-cttgatttggcatatgctgttatttggaccatctggacgtcccgtaatgaccttatcttttctagtggctc 176  Q
    |||||| ||||||||||||| || |||| |||| |||||||| |  ||||||||||||||| ||| ||||||| ||||||||||||||| || ||||  |    
T  29682588 gggggaggagagttaggttaggtttgcttcttg-tttggcatgt--tgttatttggaccatttgggcgtcccggaatgaccttatctttgctggtggtgc 29682684  T
Q  177 cctcggagaggagcctatggtggatcgagctaaactcttagctt 220  Q
     ||| |||| ||||   |||||||| ||| ||||||||||||||    
T  29682685 tctccgagatgagctagtggtggatagagttaaactcttagctt 29682728  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 221
Target Start/End: Original strand, 43411441 - 43411542
Alignment:
Q  120 tgctgttatttggaccatctggacgtcccgtaatgaccttatcttttctagtggctccctcggagaggagcctatggtggatcgagctaaactcttagct 219  Q
    |||| ||||||||||||||||||||||||  ||||||||| | |||||| ||||  | |  || | |||| || |||||||| |||| ||||||||||||    
T  43411441 tgctattatttggaccatctggacgtcccagaatgaccttgtgttttctggtggtgctcgtggtgtggagtctttggtggatagagcgaaactcttagct 43411540  T
Q  220 tg 221  Q
    ||    
T  43411541 tg 43411542  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 119 - 224
Target Start/End: Original strand, 41640750 - 41640855
Alignment:
Q  119 atgctgttatttggaccatctggacgtcccgtaatgaccttatcttttctagtggctccctcggagaggagcctatggtggatcgagctaaactcttagc 218  Q
    ||||||||||||| ||||| |||  || ||| || |||||||||||| || ||||||  ||| ||||||||||  |||||||  ||| |||||||||| |    
T  41640750 atgctgttatttgaaccatttgggtgttccggaacgaccttatctttgctggtggcttactccgagaggagccagtggtggacagagttaaactcttaac 41640849  T
Q  219 ttggaa 224  Q
    ||||||    
T  41640850 ttggaa 41640855  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 34213078 - 34213179
Alignment:
Q  123 tgttatttggaccatctggacgtcccgtaatgaccttatcttttctagtggctccctcggagaggagcctatggtggatcgagctaaactcttagcttgg 222  Q
    |||||| |||||||| ||||||||||  || |||||||| || ||| ||||| | ||| | ||||| ||| | |||||| |||  |||||||||||||||    
T  34213078 tgttatatggaccatttggacgtcccaaaacgaccttattttctctggtggcgctctccgtgaggaacctgttgtggatagagtgaaactcttagcttgg 34213177  T
Q  223 aa 224  Q
    ||    
T  34213178 aa 34213179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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