View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10104A_low_329 (Length: 230)

Name: NF10104A_low_329
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10104A_low_329
NF10104A_low_329
[»] chr8 (4 HSPs)
chr8 (2-126)||(9579155-9579279)
chr8 (12-99)||(28860535-28860623)
chr8 (1-80)||(43325608-43325687)
chr8 (1-49)||(9636132-9636180)
[»] chr3 (1 HSPs)
chr3 (1-124)||(18370844-18370970)
[»] scaffold0091 (1 HSPs)
scaffold0091 (12-101)||(15357-15447)
[»] chr4 (1 HSPs)
chr4 (12-80)||(11671711-11671780)
[»] chr2 (1 HSPs)
chr2 (12-80)||(11738716-11738785)
[»] chr5 (1 HSPs)
chr5 (15-80)||(8224118-8224184)
[»] chr1 (3 HSPs)
chr1 (12-80)||(30196109-30196178)
chr1 (12-80)||(52860455-52860524)
chr1 (1-111)||(29232401-29232513)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 2e-57; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 2 - 126
Target Start/End: Complemental strand, 9579279 - 9579155
Alignment:
Q  2 ataatacccttatgttaaaataacattttcattcaaactaatttaattcttttgttaaattcagttaattaatttaactccgtattctaaatgaaacata 101  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  9579279 ataatacccttatgttaaaataacatttccattcaaactaatttaattcttttgttaaattcagttaattaatttaactacgtattctaaatggaacata 9579180  T
Q  102 agtctttttcatatataaatttaag 126  Q
    |||||||||||||||||||||||||    
T  9579179 agtctttttcatatataaatttaag 9579155  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 12 - 99
Target Start/End: Original strand, 28860535 - 28860623
Alignment:
Q  12 tatgttaaaataacattttcattcaaactaatttaattcttttg-ttaaattcagttaattaatttaactccgtattctaaatgaaaca 99  Q
    |||||||||||||||||| ||||||||||||||| ||| ||||| ||||||||| ||||||||||||||| | |||| |||||||||||    
T  28860535 tatgttaaaataacatttccattcaaactaatttgattattttgtttaaattcaattaattaatttaactacttattttaaatgaaaca 28860623  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 43325608 - 43325687
Alignment:
Q  1 tataatacccttatgttaaaataacattttcattcaaactaatttaattcttttg-ttaaattcagttaattaatttaact 80  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||    
T  43325608 tataatgcccctatgttaaaataacattttcattcaaactaatttaattcttttgtttaaattca-ttaattattttaact 43325687  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 9636180 - 9636132
Alignment:
Q  1 tataatacccttatgttaaaataacattttcattcaaactaatttaatt 49  Q
    |||||| ||| ||||||||||||| |||| |||||||| ||||||||||    
T  9636180 tataatgcccctatgttaaaataatatttccattcaaattaatttaatt 9636132  T

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Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 18370970 - 18370844
Alignment:
Q  1 tataatacccttatgttaaaataacattttcattcaaactaatttaattcttttg-ttaaattcagttaattaatttaactccgtattctaaatgaaaca 99  Q
    |||||| ||| |||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| | |||| ||||||||||     
T  18370970 tataatgcccctatgttaaaataacatttccattcaaattaatttaattcttttgtttaaattcagttaattaatttaactacttattttaaatgaaacg 18370871  T
Q  100 taagtc--tttttcatatataaattta 124  Q
    ||  ||  ||||| |||||||||||||    
T  18370870 tatatcatttttttatatataaattta 18370844  T

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Target: scaffold0091 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 12 - 101
Target Start/End: Complemental strand, 15447 - 15357
Alignment:
Q  12 tatgttaaaataacattttcattcaaactaatttaattcttttg-ttaaattcagttaattaatttaactccgtattctaaatgaaacata 101  Q
    |||||||||||||||||| || |||||||||||| ||||||||| ||||||||||||||||||||||||| | |||| |||| ||||||||    
T  15447 tatgttaaaataacatttccaatcaaactaatttgattcttttgtttaaattcagttaattaatttaactacttattttaaaagaaacata 15357  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 11671780 - 11671711
Alignment:
Q  12 tatgttaaaataacattttcattcaaactaatttaattcttttg-ttaaattcagttaattaatttaact 80  Q
    ||||||||||||||||||  |||||||||||||| ||||||||| |||||||||||||| ||||||||||    
T  11671780 tatgttaaaataacatttctattcaaactaatttgattcttttgtttaaattcagttaaataatttaact 11671711  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 11738716 - 11738785
Alignment:
Q  12 tatgttaaaataacattttcattcaaactaatttaattcttttg-ttaaattcagttaattaatttaact 80  Q
    ||||||||||||||||||  |||||||||||||| ||| ||||| |||||||||||||||||||||||||    
T  11738716 tatgttaaaataacatttctattcaaactaatttgattattttgtttaaattcagttaattaatttaact 11738785  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Original strand, 8224118 - 8224184
Alignment:
Q  15 gttaaaataacattttcattcaaactaatttaattcttttg-ttaaattcagttaattaatttaact 80  Q
    |||||||||||||||  |||||||||||||| ||||||||| |||||||||||||||||||| ||||    
T  8224118 gttaaaataacatttctattcaaactaatttgattcttttgtttaaattcagttaattaattaaact 8224184  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 30196178 - 30196109
Alignment:
Q  12 tatgttaaaataacattttcattcaaactaatttaattcttttg-ttaaattcagttaattaatttaact 80  Q
    ||||||||||||||||||  |||||||||||||| ||| ||||| ||||||||| |||||||||||||||    
T  30196178 tatgttaaaataacatttatattcaaactaatttgattattttgtttaaattcaattaattaatttaact 30196109  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 52860524 - 52860455
Alignment:
Q  12 tatgttaaaataacattttcattcaaactaatttaattcttttg-ttaaattcagttaattaatttaact 80  Q
    ||||||||||||||||||  ||| |||||||||| ||| ||||| |||||||||||||||||||||||||    
T  52860524 tatgttaaaataacatttatattgaaactaatttgattattttgtttaaattcagttaattaatttaact 52860455  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 29232513 - 29232401
Alignment:
Q  1 tataatacccttatgttaaaa--taacattttcattcaaactaatttaattcttttgttaaattcagttaattaatttaactccgtattctaaatgaaac 98  Q
    |||||||||| |||||||||   || |||||  || |||| ||||| ||||||||  ||||||||||| ||||||||||||| | |||| ||||||||||    
T  29232513 tataatacccctatgttaaatactaccatttctatccaaattaattcaattctttgtttaaattcagtcaattaatttaactacttattttaaatgaaac 29232414  T
Q  99 ataagtctttttc 111  Q
    |||| | ||||||    
T  29232413 ataaatttttttc 29232401  T

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