View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10104A_low_332 (Length: 230)
Name: NF10104A_low_332
Description: NF10104A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10104A_low_332 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 27889570 - 27889795
Alignment:
| Q |
1 |
ttctttgtatatatgtgtgagaaaccctcctacttttcttccatgattaccaggcttcacatagttgggtggttgtagcagtgtcatcacttaccagtta |
100 |
Q |
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| T |
27889570 |
ttctttgtatatatgtgtgagaaaccctcctacttttcttccatgattaccaggcttcacatagttggatggttgtagcagtgtcatcacttaccagtta |
27889669 |
T |
|
| Q |
101 |
ttaggaggttttgagtttccaactttgatagtatattgtcagctccaaacaggtctttactctcttagttgtttatttgtgctaac--ttggcttaattt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27889670 |
ttaggaggttttgagtttccaactttgatagtatattgtcagctccaaacaggtctttactctcttagttgtttatttgtgctaacaattggcttaattt |
27889769 |
T |
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| Q |
199 |
agcgtctgtttgaattgacttatttg |
224 |
Q |
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| T |
27889770 |
aacgtctgtttgaattgacttatttg |
27889795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 27984479 - 27984256
Alignment:
| Q |
1 |
ttctttgtatatatgtgtgagaaaccctcctacttttcttccatgattaccaggcttcacatagttgggtggttgtagcagtgtcatcacttaccagtta |
100 |
Q |
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|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||| |||| |
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| T |
27984479 |
ttctttgtatatatctgtgagaaaccctcatacttttcttccatgattaccaggcttcaaatagttgaaaggttgtagcagtgtcatcagttacccgtta |
27984380 |
T |
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| Q |
101 |
ttaggaggttttgagtttccaactttgatagtatattgtcagctccaaacaggtctttactctcttagttgtttatttgtgctaacttggcttaatttag |
200 |
Q |
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| T |
27984379 |
ttaggaggttttgagtttccaactttgatagtatattgtcagctccaaacaggtctttactctcttagttgtttatttgtgttaacttggcttaatttag |
27984280 |
T |
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| Q |
201 |
cgtctgtttgaattgacttatttg |
224 |
Q |
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||| | |||||||||||||||||| |
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| T |
27984279 |
cgtatatttgaattgacttatttg |
27984256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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